PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.011G056600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 762aa MW: 83846.9 Da PI: 4.8995 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26 | 1.6e-08 | 264 | 283 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C +G++C+F H Potri.011G056600.1 264 ICDFFAK-GWCIRGSSCRFLH 283 8******.************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0017 | 259 | 285 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.718 | 259 | 286 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 259 | 284 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-6 | 264 | 283 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.2E-4 | 264 | 284 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 762 aa Download sequence Send to blast |
MPPSAAATGD DDEDHALPSP NPSFAQISGS DMDIDNNGDD EEEEDPEEEV GGGDDDDDDE 60 KIEEIEEKEE VEEEEVDQRR NDNRQHLESD RQMGSHSTHE MSELREDSIS NFKCSGPLDG 120 PLTLQKEKSC VNYLDSWSPK LSKHLVIAQK NGTLEHAINK TDAFRNSKTH LSNSSEAIAV 180 ETTEPFVITG IEVDVVLSKR NCLGQEANVV LDSKEELKPV DVKSEDSKEQ TESRISRLVA 240 SGTRARSLSP STELRDGNKR AAVICDFFAK GWCIRGSSCR FLHTTNKADN TGQQLGVDEV 300 ATREDQFDEG VRNILETPKF PHFPDPVAAS TGKEATFSSH FSSERLPPLE HKENERLHQL 360 DDKHKLSLRQ RVGIPLNAKQ FSSSKDDPGF SSSFKDVGIE NFRQQWPATD YGSYTSLINR 420 GSSFSFSSSF DTSLLGSQKL LDSDRASRSS SLLQSASAFS GSEPESLSLA SVPGDQLRHA 480 EHKTKISSND WEPSVPFRPS FFITPEMISS AGSKYDPLRD SFVLPNVGDK SFKFSFFSLG 540 ASISNTSQQP IYGDSLSNRN FGTEFNGDKS TISSHDKPHG SLSDKNCSTP GKDSFTTATV 600 TGGAGTADGE NGSALKEESA SGIGYDKVNR VTNKIDRDAR PQTDGSRHEK DLKADSVRQN 660 NDMEVDQKIG GDTQKESKVL RHFRSALIDF VKDLLKPTWR EGHLSKDAHN TIVKKTVEKV 720 LSTLQPHQIP ATVESIKQYL SSSQPKMAKL VEGYISKYGK S* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.011G056600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006377394.2 | 0.0 | protein FRIGIDA-ESSENTIAL 1 isoform X1 | ||||
TrEMBL | A0A2K1YG22 | 0.0 | A0A2K1YG22_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s05550.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10805 | 27 | 33 | Representative plant | OGRP7281 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33835.1 | 5e-39 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.011G056600.1 |