PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.011G006300.1 | ||||||||
Common Name | POPTR_0021s00430g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 115aa MW: 13454.7 Da PI: 9.7477 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.4 | 1.6e-33 | 34 | 87 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+ave+LGG+++AtPk +l++m+v++Lt++hvkSHLQ+YR+ Potri.011G006300.1 34 PRLRWTPDLHHCFVHAVERLGGEDRATPKMVLQIMDVEDLTISHVKSHLQMYRS 87 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-32 | 30 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.824 | 30 | 90 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.48E-16 | 32 | 88 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-25 | 34 | 88 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-7 | 35 | 86 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MRTTERRSVV GVNFQEIGLR SSAIVRPYVR SKMPRLRWTP DLHHCFVHAV ERLGGEDRAT 60 PKMVLQIMDV EDLTISHVKS HLQMYRSMKH EWMIQEEKNS KEMAVFINGI NEFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-21 | 35 | 90 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-21 | 35 | 90 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-21 | 35 | 90 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-21 | 35 | 90 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-21 | 35 | 90 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-21 | 35 | 90 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-21 | 35 | 90 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-21 | 35 | 90 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.011G006300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149575 | 2e-35 | AC149575.1 Populus trichocarpa clone Pop1-41G18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020541306.1 | 2e-46 | putative Myb family transcription factor At1g14600 isoform X2 | ||||
Swissprot | Q700D9 | 2e-28 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | U7E313 | 2e-77 | U7E313_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0021s00430.1 | 3e-78 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9381 | 28 | 40 | Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 1e-33 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.011G006300.1 |
Entrez Gene | 18111220 |