PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G238900.1
Common NamePOPTR_0010s24540g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 211aa    MW: 23821.8 Da    PI: 5.0758
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G238900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.91.1e-1216541250
                        HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        ++  R++ + KKA+EL +LCd+ v+++ + ++g   +++
  Potri.010G238900.1 16 SYEERKQNLKKKASELATLCDVPVCLVCVNPDGSTETWP 54
                        7999**********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.993157IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-131373IPR002100Transcription factor, MADS-box
PfamPF003191.4E-111653IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MTTLRENKAP PIKNKSYEER KQNLKKKASE LATLCDVPVC LVCVNPDGST ETWPEEEERV  60
VDVLMAYKAQ TTLKNESKEG EKSTEKVVDK APHVFETWDT RFEYLPEESL VDVLKILDRQ  120
LQVVNRVVEK EQIGKKRKIL QDGRSSKIVH DVNDDGSQKA GLITKNFLDS VGLNLTNSYT  180
GNYSDINSFS GRNSEGNSDF EKPVDLELRL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G238900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316498.11e-153uncharacterized protein LOC7477165
TrEMBLB9HVX11e-152B9HVX1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s24540.11e-153(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1711348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.15e-14AGAMOUS-like 103