PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G229900.3 | ||||||||
Common Name | POPTR_0010s23650g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 555aa MW: 61565.6 Da PI: 4.4602 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.7 | 8e-52 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 l+pGfrFhPtdeelv +yLk+kv++k+++l ++i+ +d+yk+ePwdLp k k+k+++ ewyfFs dkky +g ++nrat++gyWk+tgkd Potri.010G229900.3 10 LAPGFRFHPTDEELVRYYLKRKVTNKPFRL-DAISVTDVYKSEPWDLPvKsKLKSRDLEWYFFSMLDKKYGNGAKTNRATEKGYWKTTGKD 99 579***************************.99***************5347777777********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ++++vg+kktLv+++grap+ge+++Wvmheyrl Potri.010G229900.3 100 RPINW-NSRVVGMKKTLVYHQGRAPRGERSNWVMHEYRL 137 ****9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-60 | 8 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.352 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.3E-28 | 12 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MGSSDSATSL APGFRFHPTD EELVRYYLKR KVTNKPFRLD AISVTDVYKS EPWDLPVKSK 60 LKSRDLEWYF FSMLDKKYGN GAKTNRATEK GYWKTTGKDR PINWNSRVVG MKKTLVYHQG 120 RAPRGERSNW VMHEYRLADE ELEKAGIAQD AFVLCRIFQK SGTGPKNGEQ YGAPFIEEEW 180 ENDEVPLLPS EEMVPAGEAP VGDGSYLELN ELDQNFDSGI TSENTARPLN FYYGETSNHV 240 EQPSNFSDND IKPVIRGAEN RNGPAPPADQ NLDLPGQYEM DADKKEHNAE PINIVNALNA 300 NYLFDESYLD ALGDLPPSEG FFLEANDLSK PVEPETGGDS SGFDMVDEYL NFFDAVDENM 360 SFDPSDIFGS ETAVSDQLPP QEDVKGQTEE LSTASLNLLE THGTIDPSSS KQKPEAMKFD 420 SDFKYPFIKQ ASHRLGNIPA PPALASEFPS KDAALHLHPA SSSSINVTAG MIRIENMSLG 480 GNEMEWSFGK NGNVNIILSF GLPQQGGPAS LVPMNSLFPG KTESVVSRGW LYLMFFWVLI 540 LSVSYKIGTC ICAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-43 | 6 | 166 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-43 | 6 | 166 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-43 | 6 | 166 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-43 | 6 | 166 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-43 | 6 | 166 | 13 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-43 | 6 | 166 | 13 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root meristem (Ref.1). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G229900.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU224630 | 0.0 | CU224630.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006378789.1 | 0.0 | NAC domain-containing protein 78 isoform X2 | ||||
Swissprot | Q84K00 | 1e-167 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | U5G2X9 | 0.0 | U5G2X9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s23650.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 1e-167 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G229900.3 |
Entrez Gene | 7468451 |