PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G216200.1
Common NamePOPTR_0010s22320g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 503aa    MW: 55319.9 Da    PI: 6.8485
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G216200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.4e-17167216155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Potri.010G216200.1 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 216
                         78*******************......55************************997 PP
2AP242.91.2e-13259309155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+++++g
  Potri.010G216200.1 259 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAALEFNG 309
                         89********.7******5553..2.26**********99***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-16167225IPR016177DNA-binding domain
PfamPF008475.8E-9167216IPR001471AP2/ERF domain
SMARTSM003804.1E-32168230IPR001471AP2/ERF domain
PROSITE profilePS5103217.794168224IPR001471AP2/ERF domain
CDDcd000181.29E-11168226No hitNo description
Gene3DG3DSA:3.30.730.103.4E-17168225IPR001471AP2/ERF domain
CDDcd000189.63E-26259319No hitNo description
PfamPF008477.1E-9259309IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-17259318IPR016177DNA-binding domain
SMARTSM003802.5E-31260323IPR001471AP2/ERF domain
PROSITE profilePS5103216.41260317IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-16260317IPR001471AP2/ERF domain
PRINTSPR003673.3E-6261272IPR001471AP2/ERF domain
PRINTSPR003673.3E-6299319IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MLDLNLGISS SDSCCEDNNK NNMMVIVDVE NHQEEEEAAS RTQQMEDSAT SNSSITNTTE  60
DENSSNNSNS AFIFDILKKD GNFTNTSAIN ASKETSRNCD FTTQQLFPES TGLELNFQPG  120
LAVASAARPQ WLKLSQMGSS PEAEPENVQQ KQQQARKSRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFNSSDYEE DMKQMKNLSK  240
EEFVHILRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEVEAARAY  300
DKAALEFNGR EAVTNFEPSV YKGDVISDPN NGGSGHNLDL SLGISQPSND PKGNDSVGDS  360
HCRYGGCEIP RKERQVVEGS TAAAHMGLQT LHGSPMASKN LPAWSGIYPG LLSSYEERTT  420
EKKVEAVSSP RFSSWPWLIN GSNNVVATMS QLSVAASSGF SSTITASSAT LPFNQQNHFA  480
SNLRLAASTT SSPNPSLYSY KR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G216200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466942.10.0floral homeotic protein APETALA 2 isoform X2
SwissprotB8AMA91e-105AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A2I4KL100.0A0A2I4KL10_POPTR; AP2 family protein
STRINGPOPTR_0010s22320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-95related to AP2.7