PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.010G186600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 134aa MW: 14618.4 Da PI: 6.9331 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.8 | 3.3e-10 | 29 | 62 | 8 | 43 |
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 Ed ++v+++++ G++ W+tIar ++ gRt+ +k++ Potri.010G186600.1 29 EDAKIVQVHALRGNK-WATIARLLP-GRTDDAIKDH 62 9**************.*********.*********9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.65E-5 | 1 | 62 | No hit | No description |
PROSITE profile | PS51294 | 9.264 | 14 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.32E-7 | 28 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-7 | 29 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-11 | 29 | 62 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 134 aa Download sequence Send to blast |
PQEDATLIKL LEQHGPLRRG ATSSIMLTED AKIVQVHALR GNKWATIARL LPGRTDDAIK 60 DHRNSTGWFH FNACGGESGG GFGSRGQRKG PGDGEERCTG ETDETCLRAI MQKMMQEEAR 120 IYFDGFKGNL ENG* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.010G186600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011000247.1 | 3e-19 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | A0A2K1YWD0 | 4e-94 | A0A2K1YWD0_POPTR; Uncharacterized protein (Fragment) | ||||
STRING | POPTR_0010s19390.1 | 1e-34 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-12 | myb domain protein 73 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.010G186600.1 |