PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G186200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 280aa    MW: 33004.8 Da    PI: 10.1911
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G186200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix25.82.9e-081881968
            trihelix  9 aLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikege 68
                        +Liea  ++  + +rg+  +++W+ev++ +  r+ g+  +++ +qCk+++  l+k+yk +k   
  Potri.010G186200.1 18 TLIEAWGDRYINPNRGNVGQKDWKEVADTVnnRQNGVkpKKTDVQCKNRIVMLKKKYKIEKSKP 81
                        7999999999********************8877777667899***************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-151895No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAPPWLSRRL LERWRPYTLI EAWGDRYINP NRGNVGQKDW KEVADTVNNR QNGVKPKKTD  60
VQCKNRIVML KKKYKIEKSK PPPLSWPLCN RLDSLIGTNS NTTNTDKKPT SFTVKSKKKP  120
KKRMFSGLAS YSESSSDDDE DDMAWFEERL KKKRHRMEDV GLSDGAACRE LARAILKFGE  180
IPERIESSRQ RQMIELEKQR MEFTKEVEFE RLNMFVDAQL DHTKKSFKRD KFTSSSVLPV  240
VCRGRQEMWI FRTDSLQLNY FDKFVVHTDI YDSWIFPYN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G186200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465071.11e-173trihelix transcription factor ASIL2 isoform X4
TrEMBLA0A3N7FN291e-172A0A3N7FN29_POPTR; Uncharacterized protein
STRINGPOPTR_0010s19350.11e-154(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.24e-45sequence-specific DNA binding transcription factors