PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G160100.3
Common NamePOPTR_0010s16760g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 294aa    MW: 32596 Da    PI: 6.8723
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G160100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.55.7e-33154211259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+
  Potri.010G160100.3 154 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHH 211
                         8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-33138212IPR003657WRKY domain
SuperFamilySSF1182903.14E-28145211IPR003657WRKY domain
PROSITE profilePS5081129.712148213IPR003657WRKY domain
SMARTSM007743.2E-38153212IPR003657WRKY domain
PfamPF031069.7E-26154211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDDRDNLDPG TEFTSESSWT LGHDSDSVNY FFSNDRENSI LSEFGWNLQS DEPSRIKDLD  60
RIEAEERSDS AGNLEIQRSS AAGPARSSGR GSRDVSTTNY PSVSSSSSED PPEKSTDSGG  120
KPPEIPSTVK KKGQKRIRQP RFAFMTKSEV DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT  180
NSKCTVKKRV ERSSEDPTIV ITTYEGQHCH HTVGFPRGGI ICHQATFSSH MTPPMSQFIY  240
PGMQLPRENP PSTVVQSRPL PVEARECSTV SSTPTPQLAT DGLLGDIVPP GMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-26143210774Probable WRKY transcription factor 4
2lex_A9e-26143210774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G160100.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774311e-156GQ377431.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 11 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316097.20.0probable WRKY transcription factor 57
RefseqXP_024466901.10.0probable WRKY transcription factor 57
RefseqXP_024466902.10.0probable WRKY transcription factor 57
RefseqXP_024466903.10.0probable WRKY transcription factor 57
SwissprotQ9C9833e-75WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBLB9HXK90.0B9HXK9_POPTR; Uncharacterized protein
STRINGPOPTR_0010s16760.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-67WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jiang Y,Qiu Y,Hu Y,Yu D
    Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa.
    Front Plant Sci, 2016. 7: p. 145
    [PMID:26904091]
  3. Jiang Y,Yu D
    The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance.
    Plant Physiol., 2016. 171(4): p. 2771-82
    [PMID:27268959]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]