PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G159600.1
Common NamePOPTR_0010s16710g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 498aa    MW: 54970.3 Da    PI: 8.9113
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G159600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00049432454123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp C+k+F++   L  H r+H
  Potri.010G159600.1 432 HECPFCPKVFRSGQALGGHKRSH 454
                         78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.47E-5634No hitNo description
PROSITE profilePS501579.182936IPR007087Zinc finger, C2H2
SMARTSM003550.37931IPR015880Zinc finger, C2H2-like
PfamPF139120.0026927IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.2394116IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.14194121IPR007087Zinc finger, C2H2
SuperFamilySSF576675.41E-895116No hitNo description
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
PfamPF139127.2E-796118IPR007087Zinc finger, C2H2
SuperFamilySSF576675.41E-8427454No hitNo description
SMARTSM003550.016432454IPR015880Zinc finger, C2H2-like
PfamPF139128.4E-10432454IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39432454IPR007087Zinc finger, C2H2
PROSITE patternPS000280434454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MEANQKNNFV CKFCNKRYPC GKSLGGHIRI HLNANGTSST DEEAKVQVSK TESNSKQISV  60
PEAVGQSGYV LRENPKKKSR FVADSSNTTS LPEKVCKECG KGFQSLKALC GHMACHSKNY  120
FQDQSGTTEK LKEIVSDNQS DSETTDPRKP RRSKRMRYKT IDVFTTSLSS TSDIEQEQEE  180
VAKCLMMLSK DSGFKGCFSS LADSSDNNSV VLEGKSSSTK TRINVNNAVN FVSSGIESLE  240
VKKSMQRGVI STENDQSENS DSGYFRKGPK KVESDVSVHG FARNDEIKKY KVEFGSSYDD  300
AIDAESGKRL SRFRRVRTQL GKDFIEEDVY DQADRASMDS QKRCKNESYE FLSSRRGKCV  360
PLGGRRASHN KTNGCSDSIY ESGENSVDTD YVPNPIPNSS RMIQSRSGKT PIEQNSSGNA  420
EKNLGLKKGK LHECPFCPKV FRSGQALGGH KRSHFAGAAR DRTVVIKQDV PEISMRGLID  480
LNLPVSVEEE AGGFGPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G159600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465639.10.0zinc finger protein ZAT9
TrEMBLA0A2K1YUV70.0A0A2K1YUV7_POPTR; Uncharacterized protein
STRINGPOPTR_0010s16710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Representative plantOGRP5450716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-97C2H2-like zinc finger protein