PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.010G140700.1

Common Name

POPTR_0010s15060g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 184aa MW: 19886.8 Da PI: 10.2562

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.010G140700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	49	71	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Potri.010G140700.1 49 FECQYCHRGFANSQALGGHQNAH 71 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.83E-6	47	76	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.9E-4	47	75	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.739	49	76	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	51	71	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MSASKNTNLG DPQKKPPSST LKLLGFSVKR YQEELPATTP FNIEYIKKFE CQYCHRGFAN 60 SQALGGHQNA HKRERQRAKR ALYFFKDHQH QRIKPAGPII NAHAARSGPL ICASGSRSIK 120 AAAGVARFEC PAQSPSLLML DHHIDPRPLV GPVGAGAISA TSLIAEDEGA GVDLHLRLAP 180 LHP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.010G140700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002314923.1	1e-133	zinc finger protein GIS3
TrEMBL	B9HWW5	1e-132	B9HWW5_POPTR; Uncharacterized protein
STRING	POPTR_0010s15060.1	1e-133	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3903	24	49
Representative plant	OGRP82	15	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	5e-15	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Potri.010G140700.1
Entrez Gene	7482258