PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G099200.3 | ||||||||
Common Name | POPTR_0010s10950g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 613aa MW: 66607.3 Da PI: 9.3613 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Potri.010G099200.3 71 FICEVCNKGFQREQNLQLHRRGH 93 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00047 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Potri.010G099200.3 147 WKCEKCSKKYAVQSDWKAHSKTC 169 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.9E-6 | 70 | 93 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.89E-7 | 70 | 93 | No hit | No description |
PROSITE profile | PS50157 | 10.99 | 71 | 93 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 3.0E-5 | 71 | 93 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0052 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 112 | 142 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.8E-5 | 135 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.89E-7 | 142 | 167 | No hit | No description |
SMART | SM00355 | 140 | 147 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MAASSSSAPF FGIREEEQNQ QMKQQHSSTP TSSSAQAPPP QKKKRNQPGT PNPDAEVIAL 60 SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKTTKEVRRK VYLCPEPTCV 120 HHEPSRALGD LTGIKKHYSR KHGEKKWKCE KCSKKYAVQS DWKAHSKTCG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAQ ESARNPPTNL NTIGSHLYGS SNMTLGLSQV GTQISSLQDH 240 NNQSTDILRL GGGGARTGQF DHLLPSSIGS SSFRPPQQMP SPAFFMQEPN QNYHDENQSQ 300 QDLLQNKPFH HGLMQFADIH NTTGNPPSAG NLFNLSFLSN SSTASSISNS NNANNSNSNL 360 PTSGLLMPSH FNNQNGVGGG EGSNIFSNNV MGNQMTSGVP SLYSSSVQND NMVSHMSATA 420 LLQKAAQMGS SSSNNSASLL RSFGSSSSSG NKSDRQLIGG NFSGMFSENE NNLHDLMNSF 480 APGNSSMFGS GHAQENPYGG YTASRTSLEQ EKQHHGPNFG NTSMDEAKLH QSLNASIGGS 540 DRLTRDFLGV GPQIVRSMSG SSGFSQREKQ QQPQRQHHGM DMGGSSLDSE RHNTNISAAP 600 TSQPFGGNGS FQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-34 | 143 | 204 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 2e-34 | 143 | 204 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00255 | DAP | Transfer from AT2G02070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G099200.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208494 | 0.0 | AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006378422.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_024466896.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_024466897.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_024466898.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Swissprot | Q9ZUL3 | 1e-153 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | U5G1I0 | 0.0 | U5G1I0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s10950.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-127 | indeterminate(ID)-domain 5 |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G099200.3 |
Entrez Gene | 18102534 |
Publications ? help Back to Top | |||
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