PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G099100.2 | ||||||||
Common Name | POPTR_0010s10940g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 531aa MW: 57437.6 Da PI: 9.9254 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.7e-05 | 54 | 76 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Potri.010G099100.2 54 FICEVCNKGFQREQNLQLHRRGH 76 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00025 | 130 | 152 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Potri.010G099100.2 130 WKCEKCSKRYAVQSDWKAHSKTC 152 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12171 | 1.9E-5 | 53 | 76 | IPR022755 | Zinc finger, double-stranded RNA binding |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 54 | 76 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0052 | 54 | 76 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.73E-7 | 54 | 76 | No hit | No description |
PROSITE profile | PS50157 | 10.99 | 54 | 76 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 56 | 76 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 150 | 95 | 125 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.1E-5 | 118 | 151 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.73E-7 | 125 | 150 | No hit | No description |
SMART | SM00355 | 130 | 130 | 150 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MAAASSSAPF FGRAREEHQN QIIQQHSSTA TSSTVPTTGP QKKRRNQPGT PSKFICEVCN 60 KGFQREQNLQ LHRRGHNLPW KLKQKTTKEV KRKVYLCPEP TCVHHDPSRA LGDLTGIKKH 120 YFRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD CGTLFSRRDS FITHRAFCDA 180 LAQESARHPT SLNTIGSHLY GNNHMSLGFS QVGSQISHLQ DHHPSGNNML RLGSAGAANF 240 EHLIPPPNPP SMPMMPPSGF FMGDANQGPF PNKSLHGLMQ LPDLQSNTNN PSSASNLFNF 300 GFFSNNSNTG RTSNNDNANT GSTTTNLASP GLLNATQFNN VNGAGQRTSV FPTNMSGDHV 360 GSAMSSFFNT SMQQENITPH VSATALLQKA AQMGSTTSSN SPSGLLRSLG SSSTTGAKSI 420 RPLVSTNFGS SFSNANVGES LETHMESESQ LQGLMNSLAN GSSSIFGNEQ DNSYTGFDSS 480 SFSKADEGNM HQGLAGSDKL TLDFLGVGGR VRNIGGGFPQ RQQQNGINNI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-34 | 126 | 187 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 2e-34 | 126 | 187 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00256 | DAP | Transfer from AT2G02080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G099100.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU278645 | 0.0 | GU278645.1 Populus balsamifera isolate STL13 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278646 | 0.0 | GU278646.1 Populus balsamifera isolate INU03 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278648 | 0.0 | GU278648.1 Populus balsamifera isolate POR11 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278650 | 0.0 | GU278650.1 Populus balsamifera isolate KUU07 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278652 | 0.0 | GU278652.1 Populus balsamifera isolate FBK13 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278653 | 0.0 | GU278653.1 Populus balsamifera isolate FBK13 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278654 | 0.0 | GU278654.1 Populus balsamifera isolate FRE01 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278655 | 0.0 | GU278655.1 Populus balsamifera isolate FRE01 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278656 | 0.0 | GU278656.1 Populus balsamifera isolate GAL12 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278657 | 0.0 | GU278657.1 Populus balsamifera isolate GAL12 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278658 | 0.0 | GU278658.1 Populus balsamifera isolate GIL14 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278659 | 0.0 | GU278659.1 Populus balsamifera isolate GIL14 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278660 | 0.0 | GU278660.1 Populus balsamifera isolate LOV02 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278661 | 0.0 | GU278661.1 Populus balsamifera isolate LOV02 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278662 | 0.0 | GU278662.1 Populus balsamifera isolate RNA13 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278663 | 0.0 | GU278663.1 Populus balsamifera isolate RNA13 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278664 | 0.0 | GU278664.1 Populus balsamifera isolate STO11 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278665 | 0.0 | GU278665.1 Populus balsamifera isolate STO11 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278666 | 0.0 | GU278666.1 Populus balsamifera isolate WHR03 haplotype A zinc finger (C2H2 type) family protein gene, partial sequence. | |||
GenBank | GU278667 | 0.0 | GU278667.1 Populus balsamifera isolate WHR03 haplotype B zinc finger (C2H2 type) family protein gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024465038.1 | 0.0 | protein indeterminate-domain 5, chloroplastic isoform X1 | ||||
Swissprot | Q8GYC1 | 1e-125 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A2K1YRN5 | 0.0 | A0A2K1YRN5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s10940.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-105 | indeterminate(ID)-domain 5 |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G099100.2 |
Entrez Gene | 7462634 |
Publications ? help Back to Top | |||
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