PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G074400.1
Common NamePOPTR_0010s08520g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 193aa    MW: 21518.2 Da    PI: 6.6804
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G074400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000164062123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H++ H
  Potri.010G074400.1 40 YECSFCKRGFTNAQALGGHMNIH 62
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.09E-73766No hitNo description
Gene3DG3DSA:3.30.160.607.2E-53864IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0094062IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5314067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MESAKQQSSG TSSTDENYDR QEQVKEDSSS RTTISAKRSY ECSFCKRGFT NAQALGGHMN  60
IHRKDRANRT KDKQLASSSS VSSKASEEIK NPGYMVPNSS EPTKYYPVSE DQRNYGTYFQ  120
QPGSSPREPY SYKHGSHDFL VPRSQSLSMN DELWGTSIGL QIGSSNIQDN GGNRRVSDDD  180
EVDLELRLGH DR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G074400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315718.11e-142transcriptional regulator TAC1
TrEMBLB9HUB71e-140B9HUB7_POPTR; Uncharacterized protein
STRINGPOPTR_0010s08520.11e-141(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-16C2H2 family protein