PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.010G040000.3
Common NamePOPTR_0010s04920g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 218aa    MW: 24415 Da    PI: 6.8685
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.010G040000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.3e-11125172455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Potri.010G040000.3 125 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 172
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.49E-9119176No hitNo description
SuperFamilySSF474593.14E-16119179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828121171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-16121176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-8125172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10127177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDPPARMNEG GPYSLEEIWQ FPINGSGRGH FDLLNLEQRA AASVRKRRDV DLDVDDDSSS  60
KPTTNGLLRL KTSGSKDEDH HRHHDSKDEA EPSSGKHVEH KTQPPEPSKQ DYIHVRARRG  120
QATDSHSLAE RARREKISER MKILQDLVPG CNKVIGKALV LDEIINYIQS LQRQVEFGQT  180
FDTAGMAFGS QATREYSRGT SPEWLHMQVG GGFERTS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.85621e-179leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.010G040000.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465343.11e-156transcription factor BHLH089 isoform X4
SwissprotQ69WS36e-57BH094_ORYSJ; Transcription factor BHLH094
TrEMBLU5FXZ61e-144U5FXZ6_POPTR; Uncharacterized protein
STRINGPOPTR_0010s04920.11e-145(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-73BIG PETAL P