PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.010G036400.1 | ||||||||
Common Name | POPTR_0010s04580g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 262aa MW: 29434.5 Da PI: 7.7016 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H Potri.010G036400.1 92 FECQYCFKEFANSQALGGHQNAH 114 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.6E-5 | 88 | 118 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.19E-6 | 88 | 119 | No hit | No description |
PROSITE profile | PS50157 | 11.24 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MEKEGSNMFS SILDGDQNGH SAQSCSVEKK LRLFGFELNP CKNNESCVKG CVEGDHESVN 60 SSNTVLSSER EKPVKEKSSS SGHHGPADDK KFECQYCFKE FANSQALGGH QNAHKKERLK 120 KKRLQLQARK ASLSCYLQPY QNNPSYNYQY GSSTTPWFFD PSCSTTPDQF TLYEESQISF 180 NPCEDSHLND SQISNWHAVP AQVIPFQQDT RYKFTFTHAD QRSRDYKPSP LLASKKTCKS 240 ADLQLDLSLQ SNIQSSSRTG I* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.010G036400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006378183.1 | 0.0 | zinc finger protein 5 | ||||
TrEMBL | U5FXW8 | 0.0 | U5FXW8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s04580.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9594 | 26 | 35 | Representative plant | OGRP10209 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10480.1 | 3e-13 | zinc finger protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Potri.010G036400.1 |
Entrez Gene | 18102366 |