PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G161300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 499aa    MW: 54888.9 Da    PI: 4.8562
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G161300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.79.7e-49191451128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         + pGfrF+Ptd el+++yLk+k+eg +  + evi+e++i+k+ePwdLp k+v ++e+ew+fFs r +ky++g++++rat+ gyWkatgk++
  Potri.009G161300.1  19 MFPGFRFSPTDVELISYYLKRKIEGAEKCV-EVISEIEICKHEPWDLPaKSVIQSENEWFFFSARGRKYPNGSQSKRATELGYWKATGKER 108
                         579************************777.99***************667777899********************************** PP

                 NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +v s ++ ++g+k+tLvf+ grapkge+t+W+mhey +
  Potri.009G161300.1 109 NVNS-GSDVIGTKRTLVFHVGRAPKGERTEWIMHEYCM 145
                         ***9.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-5310160IPR003441NAC domain
PROSITE profilePS5100551.86119161IPR003441NAC domain
PfamPF023651.6E-2421144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MASGEVSRET QMSIEATSMF PGFRFSPTDV ELISYYLKRK IEGAEKCVEV ISEIEICKHE  60
PWDLPAKSVI QSENEWFFFS ARGRKYPNGS QSKRATELGY WKATGKERNV NSGSDVIGTK  120
RTLVFHVGRA PKGERTEWIM HEYCMKGQSQ DSLVVCRLRK NAEFRLSDTS NQGDVNERHL  180
STTHNSSNAV SDGGIDQGGV PASEKAAECS KSCESYSIEQ LSSASESELK LSNDVALAES  240
SSHQKDSDND EDFYADILKD DIIKLDETPF FAPPGLRSLV ASNSGAGTRP EQPVEIFMSE  300
ALPLRPVPSQ GTENQPVEIF MSEALRLSSI SSQGTENQPV EIFMSEALPL SPISWQGTEN  360
QPVEMFMSEA LPLHSILGTE NQPVEMFMSE ALPSPSILGT ENQPAEIFMS EALPSPSISS  420
QGTANRRIKL RRQMPGMSQA EMHVNNVGEE GKLPCSKEPP KCVLSLLSAK TGKLRHISTV  480
FIILTLLVVF VYLLGGFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-41101612165NO APICAL MERISTEM PROTEIN
1ut4_B5e-41101612165NO APICAL MERISTEM PROTEIN
1ut7_A5e-41101612165NO APICAL MERISTEM PROTEIN
1ut7_B5e-41101612165NO APICAL MERISTEM PROTEIN
3swm_A5e-4111617168NAC domain-containing protein 19
3swm_B5e-4111617168NAC domain-containing protein 19
3swm_C5e-4111617168NAC domain-containing protein 19
3swm_D5e-4111617168NAC domain-containing protein 19
3swp_A5e-4111617168NAC domain-containing protein 19
3swp_B5e-4111617168NAC domain-containing protein 19
3swp_C5e-4111617168NAC domain-containing protein 19
3swp_D5e-4111617168NAC domain-containing protein 19
4dul_A5e-41101612165NAC domain-containing protein 19
4dul_B5e-41101612165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1424431NRRIKLRR
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates in imbibed seeds (PubMed:19704545). Detected in early stages of seed development, especially in the basal tip of immature embryo. Particularly expressed in vascular tissues of inflorescence stems, roots, leaves and petioles (PubMed:17410378). {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:19704545}.
UniprotTISSUE SPECIFICITY: Expressed in seeds, leaves, roots and inflorescence (PubMed:17410378). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G161300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313601.30.0NAC domain-containing protein 78
SwissprotQ9XIN75e-97NAC40_ARATH; NAC domain-containing protein 40
TrEMBLA0A2K1Z8S20.0A0A2K1Z8S2_POPTR; Uncharacterized protein
STRINGPOPTR_0009s16290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Representative plantOGRP10249610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.11e-89NTM1-like 8
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]