PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G143700.1
Common NamePOPTR_0009s14590g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 336aa    MW: 37907.1 Da    PI: 8.5399
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G143700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05175194120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C++C+k+F+r  n++ H+
  Potri.009G143700.1 175 FSCSICSKTFNRYNNMQMHM 194
                         89*****************9 PP
2zf-C2H2130.00032259281123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +C+k F  k + ++H +++
  Potri.009G143700.1 259 FMCRKCSKAFAVKGDWRTHEKNC 281
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.23E-5166198No hitNo description
Gene3DG3DSA:3.30.160.602.8E-5175194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.492175202IPR007087Zinc finger, C2H2
SMARTSM003550.13175197IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
SMARTSM00355190222254IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-5245279IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.14E-6245279No hitNo description
SMARTSM0035573259279IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGLRNYHVED NNLCFQAPNF IEWLKPSSTS PSPSSSSSSS SSLSSVSTQQ VQLTNPMSIL  60
KLASFFPPQQ QESTKETIQC LPLLNRLTEK KTLKEEEDME MQESTVGVKE EKIEKVTVAL  120
HIGLPNSGDS GVETGVFDIK EEISMKKNFQ GYSFNSESRF WIPTPAQILV GPMQFSCSIC  180
SKTFNRYNNM QMHMWGHGSE FRKGPDSLKG TQPAAMLRLP CYCCAQGCKN NINHPRAKPL  240
KDFRTLQTHY KRKHGAKPFM CRKCSKAFAV KGDWRTHEKN CGKLWYCTCG SDFKHKRSLK  300
DHIRSFGKGH SPHPSLEGFE DEKECITGSE DEFAH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G143700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313674.20.0zinc finger protein WIP3
SwissprotQ9SGD11e-132ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLB9HQX30.0B9HQX3_POPTR; C2H2 family protein
STRINGPOPTR_0009s14590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-127WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]