PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G121600.2 | ||||||||
Common Name | POPTR_0009s12450g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SRS | ||||||||
Protein Properties | Length: 180aa MW: 19927.6 Da PI: 9.6676 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 106.2 | 5.3e-33 | 8 | 71 | 4 | 67 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa 67 g+++CqdCGnqakkdC ++RCRtCCks+gf+C+thvkstWvpa++rr+r q l+ ++++ + + Potri.009G121600.2 8 GGSRCQDCGNQAKKDCFYMRCRTCCKSKGFHCQTHVKSTWVPAYRRRQRAQDLSPVQQHQLQGH 71 6789*********************************************999988877765543 PP | |||||||
2 | DUF702 | 81.1 | 3e-25 | 81 | 135 | 100 | 154 |
DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ +++P+ev+s+a frc rvss+d++ +++aYqt v+igGhvfkGiLydqG+e+ Potri.009G121600.2 81 SSGTNFPAEVNSTATFRCFRVSSIDEAVDQVAYQTRVNIGGHVFKGILYDQGPEN 135 34456************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.6E-55 | 9 | 134 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 9.3E-29 | 12 | 53 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.1E-24 | 86 | 133 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MRPAGCLGGS RCQDCGNQAK KDCFYMRCRT CCKSKGFHCQ THVKSTWVPA YRRRQRAQDL 60 SPVQQHQLQG HNPKRLRENP SSGTNFPAEV NSTATFRCFR VSSIDEAVDQ VAYQTRVNIG 120 GHVFKGILYD QGPENRALTP ATTTLASTSG AAECLARPSF PFPLNAFMSD KQLFLHPKS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G121600.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313022.3 | 1e-125 | protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | Q9LQZ5 | 1e-51 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | A0A3N7FNC2 | 1e-124 | A0A3N7FNC2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s12450.1 | 1e-122 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21400.1 | 6e-52 | SHI-related sequence3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G121600.2 |
Entrez Gene | 7456348 |
Publications ? help Back to Top | |||
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