PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G096000.1
Common NamePOPTR_0009s09890g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 246aa    MW: 26780.2 Da    PI: 6.8007
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G096000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.39.6e-20752147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W++eEd+ll+++v ++G+++W+ Iar ++ gR++k+c++rw + 
  Potri.009G096000.1  7 KGPWSPEEDDLLKHLVIKHGPRNWTMIARAVP-GRSGKSCRLRWCNQ 52
                        79******************************.***********985 PP
2Myb_DNA-binding57.43.3e-1861103347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++T eEde++++a++++G++ W+tIar +  gRt++ +k++w++ 
  Potri.009G096000.1  61 AFTREEDEIIINAHAKYGNK-WATIARLLD-GRTDNAIKNHWNST 103
                         79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.084257IPR017930Myb domain
SuperFamilySSF466898.3E-324100IPR009057Homeodomain-like
SMARTSM007174.6E-17655IPR001005SANT/Myb domain
PfamPF002492.2E-18752IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-25860IPR009057Homeodomain-like
CDDcd001672.19E-16951No hitNo description
SMARTSM007172.9E-1558106IPR001005SANT/Myb domain
PROSITE profilePS5129422.06359108IPR017930Myb domain
PfamPF002496.2E-1561103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2361107IPR009057Homeodomain-like
CDDcd001676.05E-1361104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDNNRVKGPW SPEEDDLLKH LVIKHGPRNW TMIARAVPGR SGKSCRLRWC NQLSPEVEHR  60
AFTREEDEII INAHAKYGNK WATIARLLDG RTDNAIKNHW NSTLKRKYAD LIENDGTVNE  120
DGVKEKSAKT GSSSSVHKRA STPSGSDVSD AGLPVTSSML ASENMPVVET GISNDDVGVS  180
TELTLSTLGM ESGQLGRDGV GTKELLTGDV EKTMTFAPEL LAVMQEMIRK EVSIYMVGIG  240
KKSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-3961073104C-Myb DNA-Binding Domain
1msf_C3e-3961073104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.122780.0bud| catkin
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G096000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313145.10.0transcription factor MYB73
SwissprotO231608e-70MYB73_ARATH; Transcription factor MYB73
TrEMBLB9HS591e-180B9HS59_POPTR; Uncharacterized protein
STRINGPOPTR_0009s09890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-72myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]