PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G089400.1
Common NamePOPTR_0009s09250g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 251aa    MW: 26305.1 Da    PI: 8.679
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G089400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002880102123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+k F++   L  H  +H
  Potri.009G089400.1  80 YKCTVCNKAFPSYQALGGHKASH 102
                         9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.0E-1480104IPR007087Zinc finger, C2H2
SMARTSM003550.006280102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.26380107IPR007087Zinc finger, C2H2
SuperFamilySSF576671.24E-980155No hitNo description
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
PfamPF139122.2E-13132157IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328133155IPR007087Zinc finger, C2H2
SMARTSM003550.18133155IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MALEALNSPT TATPFNYEDT CVKRKRSKRS RSESPSTEEE YLALCLIMLA RGGSTTSTTT  60
ANKETAPPAP PQPPTLNLSY KCTVCNKAFP SYQALGGHKA SHRKSSSEST TAAENPSTST  120
TPATTTNTSG RTHECSICHK TFPTGQALGG HKRCHYEGTI GGNNNSSTSA AITTSDSGAV  180
GGGGVSQSQS QRSGGGFDFD LNLPALPEFE GPRIGHQALL RDQEVESPLS GKKPRLTLSL  240
QKEKTGVVSL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.44910.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G089400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313907.10.0zinc finger protein ZAT10
TrEMBLB9HMY60.0B9HMY6_POPTR; Uncharacterized protein
STRINGPOPTR_0009s09250.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-34zinc-finger protein 2