PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G075500.1
Common NamePOPTR_0009s07930g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 538aa    MW: 60724.2 Da    PI: 4.4097
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G075500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS127.41.7e-391643843232
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         +lL +  ea + + +ela+++++rl+e+a p g++++Rla y+ +A +  +             ++++   s++  aa+k+f++++P+ +f
  Potri.009G075500.1 164 HLLKAYGEAAEMEMKELAEKIMSRLKEMACPIGSTLERLAYYLIQAREGEVDF----------LWQEA---SKNYEAAFKAFYQIFPYGRF 241
                         788888899999999*******************************9999987..........34444...4566678999********** PP

                GRAS  94 shltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfe 177
                         +h+taN+ Ilea+ +e + vHi+Dfdi+qG+QWp+++++La R  g+ ++R+T+++ +e++      s+++ eet+ rL + A+++g++++
  Potri.009G075500.1 242 AHFTANSVILEAIPEEaDIVHIVDFDIGQGVQWPPMIETLARR--GKRMVRLTAIKWEEEEdcsgvgSSRSFEETKMRLYEHAQTFGLRLK 330
                         *************9987899**********************9..788********98888899*************************** PP

                GRAS 178 fnvlvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvk 232
                          + +   ++e l  e+ ++k+    gE la n+++ l ++   ++ ++    e+L+l k
  Potri.009G075500.1 331 MEEM---DMEVLVSEMKKTKKrggrGEWLAFNCMVGLPHMG--KGRSARSLGEFLRLAK 384
                         **97...666665555555556677***************8..4444444789999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.338136515IPR005202Transcription factor GRAS
PfamPF035145.8E-37164384IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MVVDYLPCYS WQSTYNPIEE VGLLFRNTDQ LGSYPEDSSL CVFFEDFSDI SSPIPFSPVS  60
LGFPTHVDDL PVTMSHPEEQ KYSLIPESNI TFDDPLTVRE IEDINDWLAS ENRGAMQNFP  120
GDDAGSLLVS PPSREASIDT LTNQTSLVLP GFGMEFDNQL MILHLLKAYG EAAEMEMKEL  180
AEKIMSRLKE MACPIGSTLE RLAYYLIQAR EGEVDFLWQE ASKNYEAAFK AFYQIFPYGR  240
FAHFTANSVI LEAIPEEADI VHIVDFDIGQ GVQWPPMIET LARRGKRMVR LTAIKWEEEE  300
DCSGVGSSRS FEETKMRLYE HAQTFGLRLK MEEMDMEVLV SEMKKTKKRG GRGEWLAFNC  360
MVGLPHMGKG RSARSLGEFL RLAKDSITLN TDGGSGTRGT ITIGDGIGWG MEVKEQKGYG  420
SVFAGQLVQF MALIESMDCH FPDHLREARI AMECVFLIPY VSSSFGLQMW DDIAKESRAL  480
SEVGLVAWEM RKDNLLEARE LIRETESFYC VNIEGVKENQ MVLSYMEVPL VKVSSWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1517038926247Protein SCARECROW
5b3h_D1e-1517038926247Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G075500.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103420.0AC210342.1 Populus trichocarpa clone POP091-B06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313234.30.0nodulation-signaling pathway 2 protein
TrEMBLA0A3N7GYN90.0A0A3N7GYN9_POPTR; Uncharacterized protein
STRINGPOPTR_0009s07930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Representative plantOGRP9520612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-18GRAS family protein