PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G071700.2
Common NamePOPTR_0009s07600g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-other
Protein Properties Length: 477aa    MW: 53211.7 Da    PI: 8.046
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G071700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.5e-092293057
                        HHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox 30 reeLAkklgLterqVkvWFqNrRakekk 57
                        + eLA+++gLte+q++ WF+ rR k+k+
  Potri.009G071700.2  2 KSELADQIGLTEKQISSWFCHRRLKDKR 29
                        579***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000866.41E-7129No hitNo description
PROSITE profilePS5007111.726130IPR001356Homeobox domain
PfamPF000461.1E-6229IPR001356Homeobox domain
SuperFamilySSF466893.08E-7235IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-9229IPR009057Homeodomain-like
PROSITE patternPS000270528IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MKSELADQIG LTEKQISSWF CHRRLKDKRL RDEVCTNGRQ DRSSGIIQDR GSGLRQDSCG  60
STKQGDYRNL DPREVESQRL YGRDFHPADL TYDRTSRYTG NVTGIDNISS GSSSSLQDKF  120
VCQREDPYDA ETSKYLAQNG AAMPLIPKGT DSFGYKPSGY LKVKGEIENA AITAVKMQLG  180
RHYKEDGPPL GVEFQPLPPG AFASPSRDPV SGPIYVGDLA QMCSPDVSGV RKQSSLGARY  240
EVYSTKMSSH DSYTEGANCN PEPSDSHDRK SHHHLEQKPT YNGSNSNAGG NSAMDMLDDL  300
AGETSAYVNK RHYRMSSKHG FEGTRSDSLS THLGPSGRRV NSEKTEAWLH DCDNDNPKIV  360
QRNNYTSKHP HLMRGSGKSL DTEERARCTI MEKEDKLHGE MKRMKGSHDP VRVKRHPTDE  420
TTVAKRFRVD FPQQEHVAKA SFSEIRRRTN LTKRSAMERP SSFSEDETPE TSSSAE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G071700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3956352e-39FQ395635.1 Vitis vinifera clone SS0AFA14YN23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464501.10.0uncharacterized protein LOC7475016 isoform X1
TrEMBLA0A2K1Z4740.0A0A2K1Z474_POPTR; Uncharacterized protein
STRINGPOPTR_0009s07600.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.13e-81HB-other family protein