PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G064700.1 | ||||||||
Common Name | POPTR_0009s06910g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 422aa MW: 46278.3 Da PI: 7.6178 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.1 | 1e-10 | 349 | 394 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P+ +k + a++L +Ave+Ik+Lq Potri.009G064700.1 349 SIAERVRRTRISERMRKLQELFPNM----DKQTNTADMLDLAVEHIKDLQ 394 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.081 | 343 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-14 | 346 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.03E-10 | 347 | 398 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.3E-13 | 348 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-7 | 349 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-10 | 349 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MNLLYSSSFK YSDGELRKSQ EFMDLNPYHY HQQQQQIQQN SGLMRYRSAP SSILESLVNG 60 TSGHDGGGIE SGDYRYLRSS SPEMDTMLAR FMSSCNGSGD SSSQNLQEFG ERPAIKQEGG 120 DSEMVYQSLP GHNLVTDNSV SVGNSMDSAF NVMSSMALEN SMQATKMSTA NGSNLARQNS 180 SPAGLFSDLG VDNGFVVMRE GGSFRAGNGT NGEASPTNKL RRHVNFSSGQ RMLPQIAEIG 240 EECIGGRSPE GDVSEARYMS RFTSDSWDGA SLSGLKRQRD NDGNMFSGLN TLDNQDGNSG 300 NRVTGLTHHL SLPKTLSETA TIEKFLDFQG NSVPCKIRAK RGFATHPRSI AERVRRTRIS 360 ERMRKLQELF PNMDKQTNTA DMLDLAVEHI KDLQKQVKTL TDTKAKCTCS SKQKHYSSPS 420 A* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00646 | PBM | Transfer from LOC_Os08g39630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G064700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002314023.1 | 0.0 | transcription factor bHLH130 isoform X2 | ||||
Refseq | XP_024463709.1 | 0.0 | transcription factor bHLH130 isoform X2 | ||||
TrEMBL | B9HNL6 | 0.0 | B9HNL6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s06910.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4005 | 33 | 59 | Representative plant | OGRP511 | 15 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 4e-71 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G064700.1 |
Entrez Gene | 7475051 |