PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G061000.1
Common NamePOPTR_0009s06580g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 729aa    MW: 79182.6 Da    PI: 6.3969
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G061000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06319339526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++f++ G C+ Gd C +aHg
  Potri.009G061000.1 319 PCPDFRK-GACRLGDMCEYAHG 339
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.207.1E-1937178IPR020683Ankyrin repeat-containing domain
SMARTSM0024817003868IPR002110Ankyrin repeat
SuperFamilySSF484031.12E-1743178IPR020683Ankyrin repeat-containing domain
PfamPF127963.6E-1079152IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.57385193IPR020683Ankyrin repeat-containing domain
SMARTSM002483.4E-485115IPR002110Ankyrin repeat
CDDcd002047.06E-1587160No hitNo description
PROSITE profilePS5008810.846120155IPR002110Ankyrin repeat
SMARTSM002480.012120152IPR002110Ankyrin repeat
SMARTSM003561.1E-5314340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.652319341IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4319339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4347377IPR000571Zinc finger, CCCH-type
SMARTSM0035630349372IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MCSGPEKAAE SPSTSTPSTV ENSPITKEMN CLTVETEDSF SSLLELAANN DVEGFKRFIE  60
QDASSIKEVG FWYGRQKGSK QIVLDQRTPL MVAATYGSVD VLKFILDHTK ADVNLSCGKD  120
KTTALHCATS GGSIKVVDAV KLLLSAGADP NCLDVNGDRP GDVIVVPPNL QSMKVTLEEL  180
LSKSDSDVSV AERDFNGSVG VCNLRVSISK SNSSSPTLSS SSENGSPHSP SVLIYSPRAS  240
KFNNLPANST SERKEYPIDP SLPDIKNSIY ATDEFRMFSF KVRPCSRAYS HDWTECPFVH  300
PGENARRRDP RKFHYSCVPC PDFRKGACRL GDMCEYAHGV FECWLHPAQY RTRLCKDGTS  360
CNRQVCFFAH TYEELRPLYV STGSAIPSPR SSQSAASVMD MAAALSLLPG SPSSVSAMSP  420
TPFNQPMSPA NGISHSSMAW SQPNVPTLHL PGSNLQSSRL RSSLSARDIP PEGFNLLPDF  480
DSQQQILNDL SCFSESRNNS SFGVSGRSKT ITPSNLEELF AAEMSSPRYA DQAAYLNQVQ  540
QQQSMLSPIS TSVFSPKNVE HPLLQAVFGV GSPGRMSSRV MEPISPMGSR LSALAQREKK  600
QQQLRSLSSR DLGSNHPMAS VAGSPGNSWS KWGSPNGKVD WSVHGDELGS LRRSSSFELG  660
NNGEEPDLSW VQSLVKESPP EMLKEKFANP VSSTASPGTG LNSNSRIDSV LESWLEQMQI  720
DQQQQLVV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.76900.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G061000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1451490.0EF145149.1 Populus trichocarpa clone WS01121_A14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314035.30.0zinc finger CCCH domain-containing protein 30
RefseqXP_024464240.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_024464241.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2K1Z3N70.0A0A2K1Z3N7_POPTR; Uncharacterized protein
STRINGPOPTR_0009s06580.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]