PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G053500.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 650aa    MW: 71374.9 Da    PI: 6.5002
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G053500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.6e-07275295526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+++ + GtC++Gd C +aHg
  Potri.009G053500.1 275 PCPDHKK-GTCRRGDLCEYAHG 295
                         7******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500888.795577IPR002110Ankyrin repeat
PROSITE profilePS5029715.88455155IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.9E-1655135IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00455585IPR002110Ankyrin repeat
PfamPF127962.5E-1055124IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.33E-1556135IPR020683Ankyrin repeat-containing domain
PRINTSPR014156.9E-55671IPR002110Ankyrin repeat
CDDcd002045.83E-1457136No hitNo description
PROSITE profilePS5008812.18290125IPR002110Ankyrin repeat
SMARTSM002480.00790122IPR002110Ankyrin repeat
PRINTSPR014156.9E-5109123IPR002110Ankyrin repeat
SMARTSM003560.0034270296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.906275297IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5275295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-4302333IPR000571Zinc finger, CCCH-type
SMARTSM0035620305328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MSNWIDTEDS FSSLLEFAAD NNVEGFKRSV FDESEIKEVG LWYGRLGASR KMVLEQRTPL  60
MIAAKYGSAD VLKLLLSLPE VDVNFCCGPD KSTALHCAAS GGSVNATNVV KLLLLAGADS  120
NATDANRCRP IDVVVAPSKF PDLKGALEEL LNNGSVCQWD TMPVSSPSWR PSSPSLSSST  180
DEGSLSSPAG SILSPVTCKP NDVHVSPAKK EYPVDPTIPD IKNCVYASDE FRMFSFKIRP  240
CCRAYAHDWT GCPFVHPGEN ARRRDPRKFH YSCMPCPDHK KGTCRRGDLC EYAHGIFECW  300
LHPSQYKTRL CKEGRSCMRR VCFFAHAPDE QRPLNMSTGA AVSSSKVDAM DFTAASNLSP  360
SSFSPTSPST FAALKYLSSN NSHSLVPWPR QTIPNFHSSL QASCLRSSLN ARDISSEDLT  420
GLWDFGFQQR RPPLNEPSPL SQPLYNGSST NLFSSSNTLN HSNLDKIFSE NVSSPHHTDQ  480
LGGGAAFVFS PTYSSAALNQ LQQQQSIIYP MQGVSPYIND HVSSLGFQLS AHVQREKMLQ  540
QLQSSLLSQK LGSKASYDLG FNGTNSRSIW ESDDRNVDRF VQADEMGRIH TPCSIKHDGE  600
EPDVSWMNET TDIPVSGTLD GSTSNPHIES SDHAALRAWL QLDHTVIHI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G053500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314073.20.0zinc finger CCCH domain-containing protein 56 isoform X1
SwissprotQ9LXV41e-177C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A2K1Z3610.0A0A2K1Z361_POPTR; Uncharacterized protein
STRINGPOPTR_0009s05810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3970622
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.11e-158CCCH-type zinc finger protein with ARM repeat domain