PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G046800.1
Common NamePOPTR_0009s05150g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 704aa    MW: 76079 Da    PI: 6.4181
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G046800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06279299526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ G C+ Gd C +aHg
  Potri.009G046800.1 279 PCPEFRK-GSCRQGDACEYAHG 299
                         8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127968.9E-971144IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.39E-1472150IPR020683Ankyrin repeat-containing domain
SMARTSM002480.02175105IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.207.7E-1575155IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.96375150IPR020683Ankyrin repeat-containing domain
CDDcd002041.86E-1377150No hitNo description
PROSITE profilePS5008811.968110145IPR002110Ankyrin repeat
SMARTSM002480.0019110142IPR002110Ankyrin repeat
SMARTSM003561.0E-4274300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662279301IPR000571Zinc finger, CCCH-type
SMARTSM0035639309332IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.709309333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MCSGSKRKPT HTVFNMENEF QKQDGVCCDF SLLLELSASN DLTGFKRAIE VEGHDIDEPG  60
LWYGRRIGSK KMGFEERTPL IIAALYGSKD VLNYILETGH VDVNRGYGSD GATALHCAAA  120
GGSSSAHEVA RLLLDASADP NSVDAKGNHP GDLIAPVVES GSNSTRKTLE IMLKGGSSGE  180
ESCVLAYQIV NEMDGLEQQE ISTPRVSKDG HEKKEYPIDL TLPDIKNGIY GTDEFRMYTF  240
KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGSCRQ GDACEYAHGI  300
FECWLHPAQY RTRLCKDETG CARRVCFFAH KPEELRPLYA STGSAVPSPR SYSANCSNLD  360
MSSISPLSLG SPSVLIPSTS SPPTPSGSSS PIGGWTNHSN VVPPALQLPG SRLKSALCAR  420
DMDLDMELLG LESHRRRQQF MDEISGLSSP SSWNNGLSTA SAFAASGDRT GELNRLGGVR  480
PTNLEDIFGS LDPSILPQMQ GLSLDAAVAQ LQPPTGMQMR QNINQQLRSS YPTSFSSSPV  540
RRSPSFGVDH SGGAAAAVLS SRSAAFAKRS QSFVERSAVN RHTGFSSPSS SANVMPSNLS  600
DWGSPDGKLD WGIQGEELNK LRKSASFGFR SNGSSFATAG ASVPATVDEP DVSWVQSLVK  660
DTPAKSGPLG FEEQQQCHLN IGGSETLPAW VEQLYMEQKP LVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.129780.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G046800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0286471e-136CT028647.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314096.30.0zinc finger CCCH domain-containing protein 66 isoform X1
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2K1Z2T30.0A0A2K1Z2T3_POPTR; Uncharacterized protein
STRINGPOPTR_0009s05150.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein