PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G043900.1
Common NamePOPTR_0009s04850g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 383aa    MW: 42559.7 Da    PI: 8.3332
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G043900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-05146169123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++C+ Cg+ F  + +L++H+ t H
  Potri.009G043900.1 146 FPCTACGEIFQKPQLLEQHQATkH 169
                         89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.598146174IPR007087Zinc finger, C2H2
PROSITE patternPS000280148169IPR007087Zinc finger, C2H2
SuperFamilySSF563994.32E-13171381No hitNo description
Gene3DG3DSA:3.90.228.101.4E-4316381IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAPNIGSVFN KFLSLFVLLL HLGCFIFTTK LDDHHPNSPP PTKKRKKVSP LAPISSSPSR  60
LKSHKALSSS WSYLKSIFSS KSSKTQTQSG TPTLTSARSS QQSIVPTIPP ETHLPELPPR  120
KKSSGSCEES DISTDHHFFP LRNDIFPCTA CGEIFQKPQL LEQHQATKHA VTQLLDGDSG  180
KNIVHIIFKT GWSCKEKSPE IHRILKIHNS PKILSRFEEY REFVRAKAAR NSKRGDERCI  240
ADGNELLRFY CSTFMCDLGL NEDSSICNQQ YCSVCGIIKS GFSPKMDGIS TLSTSWRAHM  300
AIPEEIEEEF KFMNVKRAML VCRVVAGRVG CDLEEDVDKQ DGGSDSVLGR GGSGVHTRLD  360
EEELLVFNPR AVLPCFVIVY TV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14246KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.4740.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G043900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314116.30.0uncharacterized protein LOC7468574
TrEMBLA0A2K1Z2M60.0A0A2K1Z2M6_POPTR; Uncharacterized protein
STRINGPOPTR_0009s04850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Representative plantOGRP96611112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-113C2H2 family protein