PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G032000.4 | ||||||||
Common Name | POPTR_0009s03730g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 683aa MW: 75513.2 Da PI: 9.1267 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.4 | 2.9e-07 | 582 | 631 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Potri.009G032000.4 582 RRPFSVTEVEALVHAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 631 678999********************9988889**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 1.53E-6 | 390 | 474 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 9.199 | 393 | 463 | IPR000626 | Ubiquitin domain |
PROSITE profile | PS51294 | 15.404 | 577 | 636 | IPR017930 | Myb domain |
SMART | SM00717 | 8.8E-7 | 581 | 634 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-10 | 582 | 632 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 3.56E-17 | 583 | 633 | No hit | No description |
SuperFamily | SSF46689 | 1.79E-15 | 583 | 664 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MVLQKRLDYG FNGYQVPPIP RATRSARRRG SFKKKHEENQ MCAFDLLAIV AGKLLLDKES 60 APSSSDTSAD EDQRAVINSA VKNEWQDEEK SLKVEACDQG SADKNIYVSD LSHVHRQGCS 120 SKESLVTENG LNLGLASALA KPDCEERSNA EKFGNGQSKS EIGTFASKVE GGSSEYIEFG 180 DCKLEAETKR AVKDEPHKSG MVQSSTVANI CNLEDPVVLD AKPPALVSSD SSAKVPLCGN 240 PNSSYPTNQD DVNVVSRDDD ENSSGCTHPI TTKKFFRPAP RIGDRRIRKI LASKYWKVAP 300 RLKDATVSNS DRDLKPVFRK RQNCYRHRRS ERIYPFKKRK HFAYSSPSNS DGGMSCEFVS 360 DSSQKGSNED ASVSCSRMRG GQHTSFLPRD SHVKLRIKSF SVPELLIEIP ESSTVGSLKR 420 TVMEAVTAIL GSGLRVGVLL QGKKVREDNK TLQQTGISRN NQLDALGFCL EPNPSQIPPS 480 LCPGDSPFFL QCDAPQPILR YPHTTGVVHQ GICAVPEPHA NNLGNYIESD HDSAPSPTDT 540 SMDKSTNSKA LVAVPAMNVE ALAVVPALRK SKRSEIAQRR IRRPFSVTEV EALVHAVEKL 600 GTGRWRDVKL RAFDNAKHRT YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLAAHA 660 YWSQQQAKQQ FKHQQAETCL LL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 7e-57 | 566 | 672 | 1 | 107 | Telomere binding protein TBP1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 318 | 339 | RKRQNCYRHRRSERIYPFKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G032000.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208932 | 0.0 | AC208932.1 Populus trichocarpa clone JGIACSB1081-D10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464368.1 | 0.0 | telomere repeat-binding protein 5 isoform X2 | ||||
TrEMBL | A0A2K1Z213 | 0.0 | A0A2K1Z213_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s03730.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-166 | TRF-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G032000.4 |
Entrez Gene | 7488113 |