PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.009G032000.2
Common NamePOPTR_0009s03730g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 683aa    MW: 75671.5 Da    PI: 9.1427
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.009G032000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.9e-07582631147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Potri.009G032000.2 582 RRPFSVTEVEALVHAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 631
                         678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542365.96E-6392474IPR029071Ubiquitin-related domain
PROSITE profilePS500539.199393463IPR000626Ubiquitin domain
PROSITE profilePS5129415.404577636IPR017930Myb domain
SMARTSM007178.8E-7581634IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-10582632IPR009057Homeodomain-like
CDDcd116603.78E-17583633No hitNo description
SuperFamilySSF466891.79E-15583664IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPPIP RATRSARRRG SFKKKHEENQ MCAFDLLAIV AGKLLLDKES  60
APSSSDTSAD EDQRAVINSA VKNEWQDEEK SLKVEACDQG SADKNIYVSD LSHVHRQGCS  120
SKESLVTENG LNLGLASALA KPDCEERSNA EKFGNGQSKS EIGTFASKVE GGSSEYIEFG  180
DCKLEAETKR AVKDEPHKSG MVQSSTVANI CNLEDPVVLD AKPPALVSSD SSAKVPLCGN  240
PNSSYPTNQD DVNVVSRDDD ENSSGCTHPI TTKKFFRPAP RIGDRRIRKI LASKYWKVAP  300
RLKDATVSNS DRDLKPVFRK RQNCYRHRRS ERIYPFKKRK HFAYSSPSNS DGGMSCEFVS  360
DSSQKGSNED ASVSCSRMRG EFFTRRCLFF SSVKLRIKSF SVPELLIEIP ESSTVGSLKR  420
TVMEAVTAIL GSGLRVGVLL QGKKVREDNK TLQQTGISRN NQLDALGFCL EPNPSQIPPS  480
LCPGDSPFFL QCDAPQPILR YPHTTGVVHQ GICAVPEPHA NNLGNYIESD HDSAPSPTDT  540
SMDKSTNSKA LVAVPAMNVE ALAVVPALRK SKRSEIAQRR IRRPFSVTEV EALVHAVEKL  600
GTGRWRDVKL RAFDNAKHRT YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLAAHA  660
YWSQQQAKQQ FKHQQAETCL LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-575666721107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318339RKRQNCYRHRRSERIYPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.009G032000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2089320.0AC208932.1 Populus trichocarpa clone JGIACSB1081-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464368.10.0telomere repeat-binding protein 5 isoform X2
TrEMBLA0A2K1Z2130.0A0A2K1Z213_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03730.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-165TRF-like 2