PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.009G027700.1 | ||||||||
Common Name | POPTR_0009s03280g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 194aa MW: 21035.4 Da PI: 10.0784 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00056 | 51 | 73 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k Fs+ L H +H Potri.009G027700.1 51 FSCKTCNKNFSSFQALGGHRASH 73 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0017 | 99 | 121 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F+ L H+r+H Potri.009G027700.1 99 HQCSICGLEFPIGQALGGHMRRH 121 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.81E-9 | 49 | 121 | No hit | No description |
SMART | SM00355 | 0.56 | 51 | 73 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.388 | 51 | 78 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.7E-10 | 51 | 75 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 53 | 73 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 99 | 121 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.6E-10 | 99 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.704 | 99 | 126 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 101 | 121 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009643 | Biological Process | photosynthetic acclimation | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MSSITMKRGR EEAELDMANC LMLLYKVGKA DDHELPTNYK SSSPSGAGRL FSCKTCNKNF 60 SSFQALGGHR ASHKKPKLVG STGNLLMKLP NSPPKPKNHQ CSICGLEFPI GQALGGHMRR 120 HRAGNIDATS NSADNELAVT YPPFLPAIPV LKKSNSSKRV LCLDLSLALP MDQNESELQL 180 RKAGTRPVLK CFI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.009G027700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002314198.3 | 1e-141 | zinc finger protein ZAT12 | ||||
TrEMBL | A0A2K1Z1T6 | 1e-140 | A0A2K1Z1T6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s03280.1 | 1e-140 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 3e-38 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.009G027700.1 |
Entrez Gene | 7488136 |