PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G199300.1
Common NamePOPTR_0008s20380g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 831aa    MW: 95699.1 Da    PI: 8.015
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G199300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.95.3e-21114188189
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         +fYn YA++vGF++r+ + ++s+ +g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw++++++++HnHel
  Potri.008G199300.1 114 EFYNVYATRVGFRTRTGQLYRSRSDGSVSSRRFVCSKEGFQLS--------------SRTGCPAFIRVQRRDSGKWVIDQMHKDHNHEL 188
                         6***************************************876..............589****************************9 PP
2FAR169.48.6e-22267343191
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         +fY +YA e+GF++r+ +  +sk++g+it+r+fvCskeg++++              +r+gC a +++k++++g+w+v++l+++HnH+l p
  Potri.008G199300.1 267 NFYVRYADEAGFKTRIGQLFRSKNDGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRQESGTWMVDRLQKDHNHDLEP 343
                         6***************************************999..............4899***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-17114188IPR004330FAR1 DNA binding domain
PfamPF031012.1E-17267343IPR004330FAR1 DNA binding domain
PfamPF105513.6E-29441534IPR018289MULE transposase domain
PROSITE profilePS5096610.41716752IPR007527Zinc finger, SWIM-type
PfamPF044342.9E-8723751IPR007527Zinc finger, SWIM-type
SMARTSM005757.1E-8727754IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MEKRQHRRPP PPPPPLPFEI HTLDLEPDPP GHTQHMYKKG KKDMVFDSIP SFFNNIKSSN  60
SDPYSEEYGN AVIVRAYPLG MARANSNFNV EDGRESGVEP HKGLEFDSAD VAREFYNVYA  120
TRVGFRTRTG QLYRSRSDGS VSSRRFVCSK EGFQLSSRTG CPAFIRVQRR DSGKWVIDQM  180
HKDHNHELGD VEESHPPVLQ QKAPMGRKSS VEVSSRKKLK LLAEVDDGQP CSSGSISVKR  240
VRTGADGQPL AEPYAGLVFT SADEAYNFYV RYADEAGFKT RIGQLFRSKN DGSITSRRFV  300
CSKEGFQHPS RVGCGAFMRI KRQESGTWMV DRLQKDHNHD LEPHTGTHKK SSTASKKFID  360
EVNGGLDSLD LLEINNGVHF NSSQGNNIGS EWYRLLLDYF QSRQAEDTGF FYSVEVDNGV  420
CMSIFWADGR SRFACSQFGD VIVVDTSYRK TNYLVPFATF VGVNHHKQPV LLGCALIANE  480
SKESFIWLFR TWLRAMSGCR PKSIIADQDM AIQQAIAHVF PGTRHRFSMW QIREKERENL  540
RSMSTEFNYE YEKCIYESQT NAEFNTMWNA LVNKYGLKEN AWLKEMYEKR ESWVPLYLRG  600
TFFAGIPMNE SMESFFGTFL NAETPLRDFI ARYEQGLEQR REEERKEDFN SSNLQAYLQT  660
KEPIEEQCRR LYTLRVFQIF QKELLQCYNY LGIKSYEEGT ISRYSVRRCG NEIEKHMVTF  720
SASNFDVSCS CQMFEFEGVL CRHVLRVFIM LDIREIPSCY LLHRWTRNAE HGIVCDVDSG  780
VSFQELKALM VWSLRETACK YIESGTTSLE KYRLACDTMR EGAKKICRHR *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G199300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311819.20.0protein FAR1-RELATED SEQUENCE 7
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLB9HMA50.0B9HMA5_POPTR; Uncharacterized protein
STRINGPOPTR_0008s20380.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]