PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G164100.1
Common NamePOPTR_0008s16410g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 194aa    MW: 21675.7 Da    PI: 8.201
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G164100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000163961123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H++ H
  Potri.008G164100.1 39 YECSFCKRGFTNAQALGGHMNIH 61
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.8E-53465IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.33E-73565No hitNo description
SMARTSM003550.0093961IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5313966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MESAKQGSPE ASSEENYDSQ EQVKEDLSSN TATTAKRSYE CSFCKRGFTN AQALGGHMNI  60
HRKDRANRTR GKNLASSSSV SSKANEEIKN PRYMVPNSSI PTNYYPFLEA QRNHEMYFQP  120
PAGSSPRQPY SNYKHGSQDF LRPRSQSLSM NEELWGKGLS LQIGSANIQD SGGNRRVSDD  180
DEVDLELRLG RDR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G164100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311667.21e-143transcriptional regulator SUPERMAN
TrEMBLB9HKF91e-141B9HKF9_POPTR; Uncharacterized protein
STRINGPOPTR_0008s16410.11e-142(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-16C2H2 family protein