PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G161800.2 | ||||||||
Common Name | POPTR_0008s16170g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 277aa MW: 31524.2 Da PI: 9.3776 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.5 | 8.9e-07 | 134 | 182 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h++ Er RR+r ++++ L +llP++ +K +K +i +A + I++L+ Potri.008G161800.2 134 CYRHKMSERLRRQRERNGYLALHSLLPHD-----TKKDKNSIMLMAAKKIQELE 182 567*************************9.....8999999*******999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-10 | 129 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.66E-7 | 130 | 182 | No hit | No description |
PROSITE profile | PS50888 | 11.674 | 132 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-7 | 135 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0024 | 138 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MQKHQHGAPV STKISFLDCI DLSTPDIQQS FSLTNSSWKL KFELPGKGQG RGLEMDHFFQ 60 QQFLQGDVFC YANGPVNQSA FVPYICRPWG GSEVGVGSSS IGVYPTNMNR RMIEFMRRSF 120 TVKIETQEPD SKRCYRHKMS ERLRRQRERN GYLALHSLLP HDTKKDKNSI MLMAAKKIQE 180 LEMYKEMLKR RNDEIEERLA ASGIRNVEST KIRIEVANPT SGVDPMIDVL KCLKSLGTKT 240 RSIQSQFSDQ ELVAVMEIET KIEAAEIENA VKRTLA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 144 | KRCYRHKMSERLRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G161800.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024462136.1 | 1e-166 | transcription factor bHLH92 | ||||
Refseq | XP_024462137.1 | 1e-166 | transcription factor bHLH92 | ||||
Refseq | XP_024462138.1 | 1e-166 | transcription factor bHLH92 | ||||
Refseq | XP_024462139.1 | 1e-166 | transcription factor bHLH92 | ||||
Refseq | XP_024462140.1 | 1e-166 | transcription factor bHLH92 | ||||
TrEMBL | A0A2K1ZI81 | 0.0 | A0A2K1ZI81_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s16170.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 3e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G161800.2 |
Entrez Gene | 7473448 |