PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G142400.5 | ||||||||
Common Name | POPTR_0008s14180g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 610aa MW: 66543.2 Da PI: 9.2491 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Potri.008G142400.5 69 FICEVCNKGFQREQNLQLHRRGH 91 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00029 | 145 | 167 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Potri.008G142400.5 145 WKCEKCSKRYAVQSDWKAHSKTC 167 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.52E-7 | 68 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.8E-6 | 68 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 3.0E-5 | 69 | 91 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.99 | 69 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 110 | 140 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.2E-5 | 133 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.52E-7 | 140 | 165 | No hit | No description |
SMART | SM00355 | 130 | 145 | 165 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence Send to blast |
MAASSSVPFF GIREEDQNQM KQQHSSTPTS SSAQAPPPPK KKRNQPGTPN PDAEVIALSP 60 KTLMATNRFI CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK TTKEVRRKVY LCPEPTCVHH 120 DPSRALGDLT GIKKHYSRKH GEKKWKCEKC SKRYAVQSDW KAHSKTCGTR EYRCDCGTLF 180 SRRDSFITHR AFCDALAQES ARNPPPNLNT IGSHLYGSSN MTLGLSRVGT QISSLQDHSN 240 QSTDVLRFGG GVRTGQFDHL LPPSIGSSSF RPPQQMPSSA FFMQETSQNY HDENQSQQEL 300 LQNKPFHHGL MQFADIHNNT SNPPSAGNLF NLSFLSNSST TNSNNANNSN SNLPTSGLLI 360 SDHFNNQNGV GGGSEGTNNF SNNVRGNQMT SGVPSLFSSS VQNDNMVSHM SATALLQKAA 420 QMGSTSSNNS ASLLRSFGSS SSSGTKSDRA LVGGNFGGML SDNENNLHEL MNSFTPGNPS 480 IFGSGHAQEN PYGGYTANRT SLEQEKQHHG PNFGNINMDE AKLHQGLNAS NIGGSDRLTR 540 DFLGVGPQIV RSMSGSSGFS QREKQQQQQL QHQHHGMDMG DSSLDLERHN TNISAAPTSQ 600 SFGGNGSFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-34 | 141 | 202 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 2e-34 | 141 | 202 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G142400.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208494 | 0.0 | AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006379802.2 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_006379803.2 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_006379804.2 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_024463340.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_024463341.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Swissprot | Q9ZUL3 | 1e-153 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A2K1ZH36 | 0.0 | A0A2K1ZH36_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s14180.4 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-141 | indeterminate(ID)-domain 5 |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G142400.5 |
Entrez Gene | 18101538 |
Publications ? help Back to Top | |||
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