PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G142400.3
Common NamePOPTR_0008s14180g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 610aa    MW: 66543.2 Da    PI: 9.2491
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G142400.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-056991123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k F r  nL+ H r H
  Potri.008G142400.3 69 FICEVCNKGFQREQNLQLHRRGH 91
                        89*******************88 PP
2zf-C2H213.10.00029145167123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H +t+
  Potri.008G142400.3 145 WKCEKCSKRYAVQSDWKAHSKTC 167
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.52E-76891No hitNo description
Gene3DG3DSA:3.30.160.606.8E-66891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121713.0E-56991IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.996991IPR007087Zinc finger, C2H2
SMARTSM003550.00526991IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM00355130110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-5133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.52E-7140165No hitNo description
SMARTSM00355130145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MAASSSVPFF GIREEDQNQM KQQHSSTPTS SSAQAPPPPK KKRNQPGTPN PDAEVIALSP  60
KTLMATNRFI CEVCNKGFQR EQNLQLHRRG HNLPWKLKQK TTKEVRRKVY LCPEPTCVHH  120
DPSRALGDLT GIKKHYSRKH GEKKWKCEKC SKRYAVQSDW KAHSKTCGTR EYRCDCGTLF  180
SRRDSFITHR AFCDALAQES ARNPPPNLNT IGSHLYGSSN MTLGLSRVGT QISSLQDHSN  240
QSTDVLRFGG GVRTGQFDHL LPPSIGSSSF RPPQQMPSSA FFMQETSQNY HDENQSQQEL  300
LQNKPFHHGL MQFADIHNNT SNPPSAGNLF NLSFLSNSST TNSNNANNSN SNLPTSGLLI  360
SDHFNNQNGV GGGSEGTNNF SNNVRGNQMT SGVPSLFSSS VQNDNMVSHM SATALLQKAA  420
QMGSTSSNNS ASLLRSFGSS SSSGTKSDRA LVGGNFGGML SDNENNLHEL MNSFTPGNPS  480
IFGSGHAQEN PYGGYTANRT SLEQEKQHHG PNFGNINMDE AKLHQGLNAS NIGGSDRLTR  540
DFLGVGPQIV RSMSGSSGFS QREKQQQQQL QHQHHGMDMG DSSLDLERHN TNISAAPTSQ  600
SFGGNGSFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34141202364Zinc finger protein JACKDAW
5b3h_F2e-34141202364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G142400.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084940.0AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006379802.20.0protein indeterminate-domain 5, chloroplastic
RefseqXP_006379803.20.0protein indeterminate-domain 5, chloroplastic
RefseqXP_006379804.20.0protein indeterminate-domain 5, chloroplastic
RefseqXP_024463340.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_024463341.10.0protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-153IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A2K1ZH360.0A0A2K1ZH36_POPTR; Uncharacterized protein
STRINGPOPTR_0008s14180.40.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-141indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]