PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.008G123100.1

Common Name

POPTR_0008s12210g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 246aa MW: 25899.7 Da PI: 8.8009

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.008G123100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.4e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F ++ L H++ H Potri.008G123100.1 66 YECQYCSREFANSQALGGHQNAH 88 99******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.7E-5	63	92	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.78E-6	63	93	No hit	No description
Pfam	PF13912	1.2E-5	66	90	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	12.175	66	93	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MAELDYETKH NSTTTSTRLK LFGFNVSEDE ELIATTYSSS LKSSSCNTPD SSSFGTATAT 60 GDSRKYECQY CSREFANSQA LGGHQNAHKK ERQQLKRAQM QATRNAAAAA VSFGRNPMIS 120 AFAPPPHLLA QAAGQVVVPE ASQSWVYLPR AAPPFHVSHG SVFPRGVGGR GVGSLTYGGS 180 VGDFGLASSA SGPYQQVQSR AHISRVIGDL NGPTSLSRFS KSDGGPSFDD KLSLDLHLSL 240 SPAGP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Acts upstream of GIS, GIS2, ZFP8, and the trichome initiation factors GL1 and GL3. Binds the promoter region of GIS and GIS2, which may be direct targets of GIS3. {ECO:0000269\|PubMed:25640859}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.008G123100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002312409.1	0.0	zinc finger protein GIS3
Swissprot	Q9C9H1	4e-55	GIS3_ARATH; Zinc finger protein GIS3
TrEMBL	B9HJ48	1e-180	B9HJ48_POPTR; Uncharacterized protein
STRING	POPTR_0008s12210.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3198	13	16
Representative plant	OGRP82	15	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41940.1	7e-11	zinc finger protein 8

Link Out ? help Back to Top
Phytozome	Potri.008G123100.1
Entrez Gene	7482848

Publications ? help Back to Top
Sun L, et al. GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis. New Phytol., 2015. 206(1): p. 220-30 [PMID:25640859]