PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G118300.1
Common NamePOPTR_0008s11710g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 450aa    MW: 49697.8 Da    PI: 6.2757
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G118300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15.3e-10163200542
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 
                         k  rr+++NReAAr+sR+RKka++++Le     L++  
  Potri.008G118300.1 163 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLRLTQLE 200
                         788*************************8655555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.0E-7158206No hitNo description
SMARTSM003385.1E-9159230IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.393161205IPR004827Basic-leucine zipper domain
PfamPF001701.2E-6163202IPR004827Basic-leucine zipper domain
CDDcd147084.69E-25163215No hitNo description
SuperFamilySSF579597.74E-7163206No hitNo description
PROSITE patternPS000360166181IPR004827Basic-leucine zipper domain
PfamPF141441.3E-31248321IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MYCHSSFLPR GEDINSRNQT RFADLGELHQ PAPVFPHDDA VDLSSSSMFS LKSGNVTVVS  60
PNLPYATALN TSIGPVEIAT TGAGCLDTGQ YMYQKGTGFG SSLGNWQSIE TWGDSGMADN  120
SQQTDTSTDV DADDKNQLYG VQHGTVVVVE SVDQSKGKTG DQKTLRRLAQ NREAARKSRL  180
RKKAYVQQLE SSRLRLTQLE QELQRARQQG FFIASGFSGD HGHSIAGNEA FAFDLDYSRW  240
LDEHHRLIND LRSAMNSHMS DDELRLLVDG VMAHYDEIFR LKSIGAKADV FHMLSGMWKT  300
PAERCFMWLG GFKSSELLKI LGNHLEPLTD QQLMGICNLQ QSSQQAEDAL SQGMEALQQS  360
LVDTLSSTSL GPAGSGNVAD YMGQMAIAMG KLATLENFLH QADLLRQQTL QQMHRILTTR  420
QAARALLVIS DYTSRLRALS SLWLARPRD*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the apical meristem, the floral meristem, each whorl of organ primordia, and in ovule primordia during wild-type flower development. {ECO:0000269|PubMed:9990857}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269|PubMed:19395638, ECO:0000269|PubMed:19395639, ECO:0000269|PubMed:9990857}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G118300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311449.20.0transcription factor TGA2.2 isoform X1
SwissprotQ9SX270.0PAN_ARATH; Transcription factor PERIANTHIA
TrEMBLB9HJ060.0B9HJ06_POPTR; Uncharacterized protein
STRINGPOPTR_0008s11710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60223149
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-160bZIP family protein
Publications ? help Back to Top
  1. Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU
    The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control.
    Front Plant Sci, 2011. 2: p. 79
    [PMID:22645551]
  2. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  3. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. de Luis Balaguer MA, et al.
    Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640
    [PMID:28827319]