PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G094500.1
Common NamePOPTR_0008s09410g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 510aa    MW: 56065.7 Da    PI: 8.1608
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G094500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005444466123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp C+k+F++   L  H r+H
  Potri.008G094500.1 444 HECPFCPKVFRSGQALGGHKRSH 466
                         78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.91E-5634No hitNo description
PfamPF139129.9E-5927IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369936IPR007087Zinc finger, C2H2
SMARTSM003550.31931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS501578.87194117IPR007087Zinc finger, C2H2
SMARTSM003550.4994116IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.59E-895116No hitNo description
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
PfamPF139121.5E-696118IPR007087Zinc finger, C2H2
SuperFamilySSF576676.59E-8439466No hitNo description
PfamPF139123.7E-10443466IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39444466IPR007087Zinc finger, C2H2
SMARTSM003550.016444466IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280446466IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
METNQKNNFV CKYCNKRYPC GKSLGGHIRI HLNANGTCST DEDAKVKMST TENKSKQISV  60
SEAGGQFGYA LRENPKKTTR FVADSSNTTS LPEQLCKECG KGFQSLKALC GHMACHSKNF  120
FQDQSGATMK LKGIIMDKQS DSETTDPIEP RRSKRMRYKA IDVYTSSLSL TNTASLSSTS  180
DIEQEQEEVA KSLMMLSKDS GFKGCFSSVA DSSDNNSVVL EGKSSYMKMR INVNDGINFV  240
SSGIESLEMK KATQRGVNSA ENDQSENSDS GYFRNGPKKV ESDVSVHGFA RNGEFKKQEV  300
DSMFSYDDEL DAESGKRLSM SRHIRTQLGK DFIVDDVYNQ GDRALMDSQK GCKNESCEYL  360
SSSVRNRGSK CVSLGGRRTS HNRINGCSDS IYESGENSVD TDYVPNPIAN SSKMIQSRSG  420
KTPIEKSSSG KAEKKLGLKI EKVHECPFCP KVFRSGQALG GHKRSHFIGA ARVRPVVIEQ  480
DVPEISTRGL IDLNLPVSME EESDGLGPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G094500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311333.20.0uncharacterized protein LOC7471050
TrEMBLB9HID50.0B9HID5_POPTR; Uncharacterized protein
STRINGPOPTR_0008s09410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Representative plantOGRP5450716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-68C2H2-like zinc finger protein