PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G094000.1
Common NamePOPTR_0008s09360g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 294aa    MW: 32254.6 Da    PI: 6.1727
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G094000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.36.5e-33154211259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp +v++tYeg+H h+
  Potri.008G094000.1 154 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPAIVITTYEGQHCHH 211
                         8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-33138212IPR003657WRKY domain
SuperFamilySSF1182903.27E-28145211IPR003657WRKY domain
PROSITE profilePS5081129.677148213IPR003657WRKY domain
SMARTSM007741.6E-38153212IPR003657WRKY domain
PfamPF031068.0E-26154211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDDTENPDPG TEFTSESSWT LGPDSDRANC FFSNHRENSI LSEFGWNLQS DEPARFMDLD  60
PVEAEERSDL AGNIEIQRLQ GASPAGSGGG GADVSTSNYP SVSSSSSEDQ PDKSTGSGGK  120
PPEIPSTKVK KKGQKRIRQP RFAFMTKSEV DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT  180
NSKCTVKKRV ERSSEDPAIV ITTYEGQHCH HTVGFPRGGI ISHEATFASH MTPPTSQFYY  240
PGMQLPRENP PSTVVQSQPL PVGARECNTV PTRTPQLPTD EGLLGDIVPP GMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-25143210774Probable WRKY transcription factor 4
2lex_A2e-25143210774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G094000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774310.0GQ377431.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 11 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311329.20.0probable WRKY transcription factor 57
RefseqXP_024461923.10.0probable WRKY transcription factor 57
RefseqXP_024461924.10.0probable WRKY transcription factor 57
SwissprotQ9C9832e-73WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBLB9HID00.0B9HID0_POPTR; Uncharacterized protein
STRINGPOPTR_0008s09360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108143140
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-69WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jiang Y,Qiu Y,Hu Y,Yu D
    Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa.
    Front Plant Sci, 2016. 7: p. 145
    [PMID:26904091]
  3. Jiang Y,Yu D
    The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance.
    Plant Physiol., 2016. 171(4): p. 2771-82
    [PMID:27268959]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]