PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.008G076800.1 | ||||||||
Common Name | POPTR_0008s07650g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 256aa MW: 28646.2 Da PI: 7.5721 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.5 | 8e-27 | 76 | 166 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+++GF +r++ ++ s+r+g+i++rt+vC++eg+r++ +k +r++ra+tr+gC+a++ +k+++g w++ +l++eH+H+la Potri.008G076800.1 76 EFYCSYATRTGFVTRMRDHNCSQRDGSIISRTLVCNREGFRKSADKPrMPWSRKPRAVTRVGCRARVSFRKQSNGAWVIRSLVKEHTHPLA 166 6******************************************99984556899***********************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-25 | 76 | 166 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MDLEHSPDVP NEDLNNSTDG NPQHGSDGTI GGSSIEATSQ PEQSDKMTPN STGGFELTVV 60 EPYVGQEFES EAAALEFYCS YATRTGFVTR MRDHNCSQRD GSIISRTLVC NREGFRKSAD 120 KPRMPWSRKP RAVTRVGCRA RVSFRKQSNG AWVIRSLVKE HTHPLALPEN QSPKARGNPK 180 IYQVPADDKR VHELMRELMV EKKRNASLTE FIQLLFNHIE EHTQGLSEKI QCIVEKVNKM 240 ESEGKKSGSE IIMSL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.008G076800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CU227828 | 1e-60 | CU227828.1 Populus EST from severe drought-stressed leaves. | |||
GenBank | CU228608 | 1e-60 | CU228608.1 Populus EST from severe drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311261.2 | 0.0 | protein FAR1-RELATED SEQUENCE 12 | ||||
TrEMBL | B9HHY3 | 0.0 | B9HHY3_POPTR; FAR1 family protein | ||||
STRING | POPTR_0008s07650.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 | Representative plant | OGRP3376 | 7 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G59470.2 | 5e-48 | FAR1 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.008G076800.1 |
Entrez Gene | 7462115 |