PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G071300.2
Common NamePOPTR_0008s07140g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 251aa    MW: 28727.4 Da    PI: 9.7526
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G071300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.14.8e-1320103186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  + +L+ea  ++  +l+rg+l++++W+ev++++  r+ g+  +++ +qCk++++ l+k+yk +k           st+p++ +l+
  Potri.008G071300.2  20 CWSDGATGTLVEAWGDRYINLNRGNLRQKDWKEVADAVnnRQNGVkpRKTDIQCKNRIDTLKKKYKIEKSKPPP------STWPFYYRLD 103
                         7*************************************9977788656799***************99887775......5899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-2618105No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDPSPSAAIT RPHHGGREDC WSDGATGTLV EAWGDRYINL NRGNLRQKDW KEVADAVNNR  60
QNGVKPRKTD IQCKNRIDTL KKKYKIEKSK PPPSTWPFYY RLDSLLGTNS NATNTFKKPT  120
SVTFTVKSKT KPQNDVYPGL ASCGESSSDD DDMAWFDERV KKKRHRMEDV DLSDGAACRE  180
LARAILKFGE IYERIESSKQ QQMIELEKQR MEFTKEVEFE RMNLFVDAQL ELKKKSFSRD  240
KFASSSGKKL *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G071300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2312271e-112CU231227.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463633.10.0trihelix transcription factor ASIL2 isoform X4
TrEMBLA0A2K1ZD920.0A0A2K1ZD92_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07140.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.12e-70sequence-specific DNA binding transcription factors