PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G045600.1
Common NamePOPTR_0008s04540g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 364aa    MW: 41099.2 Da    PI: 5.0563
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G045600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.3e-0689112226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         k  lC ff + G+C  G +CkF+H+
  Potri.008G045600.1  89 KSILCEFFKA-GQCAKGFKCKFSHD 112
                         6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.84E-687112IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-487113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15987114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-489113IPR000571Zinc finger, CCCH-type
SMARTSM003563.9157194IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.953157195IPR000571Zinc finger, CCCH-type
PfamPF165431.0E-17214292IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MPPKQSKADL AKKQKVVEDK TFGLKNKSKS KSVQKYVQNL QQAVQPKLDP SKIAAKKKKE  60
EEKAREKELN DLFKVAVSQP KVPVGVDPKS ILCEFFKAGQ CAKGFKCKFS HDLNVQRKGE  120
KIDIYSDKRD EDTMEDWDQE TLEKVVESKK NEYNQNKPTD IVCKYFLEVV EKKQYGWFWS  180
CPNGGKDCHY RHALPPGYVL KSQMKALLEE EADKIPIEEE IENQRAKLTA STPMTPELFT  240
QWKTKKAEER EAGLAAKRAE RAKNDRMSGR ELFLSDSSVF VDDAEAYENY QRGEELVVTE  300
EKSKVNSAAV PSTSTGAVAD TEEDLPDEDE DDDELDMDEL NELEASLSKT SVQTHGPGIK  360
ASS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.135900.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G045600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312050.20.0zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A2K1ZBR50.0A0A2K1ZBR5_POPTR; Uncharacterized protein
STRINGPOPTR_0008s04540.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44191113
Representative plantOGRP464966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-145C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]