PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G045300.1
Common NamePOPTR_0008s04490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 507aa    MW: 56144.9 Da    PI: 7.295
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G045300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.17.9e-17168217155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Potri.008G045300.1 168 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 217
                         78*******************......55************************997 PP
2AP241.53.3e-13260310155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+++ +g
  Potri.008G045300.1 260 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAALNCNG 310
                         89********.7******5553..2.26**********99**********98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16168226IPR016177DNA-binding domain
PfamPF008477.7E-9168217IPR001471AP2/ERF domain
CDDcd000182.31E-23169227No hitNo description
SMARTSM003803.5E-32169231IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-17169226IPR001471AP2/ERF domain
PROSITE profilePS5103217.556169225IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-16260319IPR016177DNA-binding domain
CDDcd000184.03E-24260320No hitNo description
PfamPF008479.3E-9260310IPR001471AP2/ERF domain
SMARTSM003802.4E-30261324IPR001471AP2/ERF domain
PROSITE profilePS5103215.422261318IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-15261318IPR001471AP2/ERF domain
PRINTSPR003671.3E-5262273IPR001471AP2/ERF domain
PRINTSPR003671.3E-5300320IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MLDLNLGITY SDSSCDDNNK NGMMVIVDVE NHHHQEEEEA SRTRQMEDSA ASNSSTINTT  60
EDENSSNNSN SAFIFDILKK DENFTSTTTI DASKQTNPNC DFTTQQLSPQ RSGLEFNLQP  120
GLAGTTATRP QWLKLSQMGS SGEAELRIVQ QKQQQARKSR RGPRSRSSQY RGVTFYRRTG  180
RWESHIWDCG KQVYLGGFDT AHTAARAYDR AAIKFRGVDA DINFNLSDYE EDMKQMKNLN  240
KEEFVHILRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDSEVEAARA  300
YDKAALNCNG REAVTNFEPS VYKGDTVFDT NYGGSGHNLD LSLGISQPTN DPKGNDNLGD  360
GHCSFGGCEI PIKERQAKAE GTAAARMGLE TLHGLPIASR NLPTWSGMFP GLASSYEERT  420
PEKRFEAVSP PRFSSWPWQI NGSNSVAATM PQLCVAASSG FSSSTKTVPS ATLPFNQQNH  480
FANNNPRLAA FTTSATNPSF YYSYTS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G045300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312046.10.0floral homeotic protein APETALA 2 isoform X1
SwissprotB8AXC31e-105AP21_ORYSI; APETALA2-like protein 1
TrEMBLB9HLZ70.0B9HLZ7_POPTR; Uncharacterized protein
STRINGPOPTR_0008s04490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.33e-95related to AP2.7