PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G041500.1 | ||||||||
Common Name | POPTR_0008s04110g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 220aa MW: 24355.2 Da PI: 9.6031 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.5 | 2.6e-21 | 17 | 64 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i ks qvtfskRr+g++KKA+ELS+LC++++a+i+fs+ +k + + Potri.008G041500.1 17 KIAKKSHLQVTFSKRRAGLFKKASELSTLCGVDIAMIVFSPAQKAFSF 64 68899999*********************************9997665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.815 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-26 | 8 | 80 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.0E-32 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-17 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.8E-24 | 17 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-17 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-17 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MVNKKPTMGR QKIKIEKIAK KSHLQVTFSK RRAGLFKKAS ELSTLCGVDI AMIVFSPAQK 60 AFSFGHPSVD SMMHRFLTGS PPPPPPSSGL HQLIETRRDA NVHEQNMQLA QILNQLEAEK 120 KNGEVLDQMR KVNRSQCCWE APIEELELHE LEQLRGALEE LKKTVAKQVN NILIQSTSSL 180 PFLAVNGVGE VGNLGTKLEI DNASAALHFN NFAYAQKIC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-16 | 8 | 82 | 1 | 75 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G041500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215733 | 0.0 | AC215733.1 Populus trichocarpa clone POP051-I21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311102.1 | 1e-162 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | B9HLM7 | 1e-161 | B9HLM7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s04110.1 | 1e-162 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-44 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G041500.1 |
Entrez Gene | 7479888 |