PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.008G031800.3 | ||||||||
Common Name | POPTR_0008s03170g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 397aa MW: 45131.6 Da PI: 4.1947 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.2 | 3.3e-53 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 l+pGfrFhPtdeelv +yLk+kv++k++++ ++i+ +diyk+ePwdLp k k+k+++ ewyfFs dkky +g+++nrat++gyWk+tgkd Potri.008G031800.3 10 LAPGFRFHPTDEELVRYYLKRKVTNKPFRF-DAISVTDIYKSEPWDLPdKsKLKSRDLEWYFFSMLDKKYGNGSKTNRATEKGYWKTTGKD 99 579**************************9.99**************95347777888********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ + ++++vg+kktLv+++grap+g++++Wvmheyrl Potri.008G031800.3 100 RPIRQ-NSQVVGMKKTLVYHQGRAPRGQRSNWVMHEYRL 137 ****9.99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-61 | 8 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.072 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-28 | 12 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MGRSDSATSL APGFRFHPTD EELVRYYLKR KVTNKPFRFD AISVTDIYKS EPWDLPDKSK 60 LKSRDLEWYF FSMLDKKYGN GSKTNRATEK GYWKTTGKDR PIRQNSQVVG MKKTLVYHQG 120 RAPRGQRSNW VMHEYRLVDE ELEKAGIAQD AFVLCRIFQK SGTGPKNGEQ YGAPFIEEEW 180 DDDEVPLLPS EEMVLTEEAP VGDDAYLEMN ELGQNFDTGI TSENTALPQN FYYGEASNYV 240 EQPRDFSEDD LKPMLRGAEN RHGPSLPAEE NLDLPGQYET DAVKNEYNNA EPMNNVNAVD 300 VNYLFDESYL DALNNLPQSE GLFLEANDLS NPVEPETGGD SSGFDMLEEY LNFFDADDEN 360 MSFDPSDIFA SDTAVSNQQP PPQEVRIYSN LHCLIH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-47 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-47 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-47 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-47 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-47 | 9 | 166 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-47 | 9 | 166 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root meristem (Ref.1). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.008G031800.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024463067.1 | 0.0 | NAC domain-containing protein 78 isoform X1 | ||||
Swissprot | Q84K00 | 1e-132 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | A0A2K1ZAW7 | 0.0 | A0A2K1ZAW7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s03170.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 1e-135 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.008G031800.3 |
Entrez Gene | 7494918 |