PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G031800.2
Common NamePOPTR_0008s03170g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 558aa    MW: 62243.2 Da    PI: 4.3697
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G031800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.36.2e-53101371128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         l+pGfrFhPtdeelv +yLk+kv++k++++ ++i+ +diyk+ePwdLp k k+k+++ ewyfFs  dkky +g+++nrat++gyWk+tgkd
  Potri.008G031800.2  10 LAPGFRFHPTDEELVRYYLKRKVTNKPFRF-DAISVTDIYKSEPWDLPdKsKLKSRDLEWYFFSMLDKKYGNGSKTNRATEKGYWKTTGKD 99 
                         579**************************9.99**************95347777888********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++ + ++++vg+kktLv+++grap+g++++Wvmheyrl
  Potri.008G031800.2 100 RPIRQ-NSQVVGMKKTLVYHQGRAPRGQRSNWVMHEYRL 137
                         ****9.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-618160IPR003441NAC domain
PROSITE profilePS5100558.07210160IPR003441NAC domain
PfamPF023654.2E-2812137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MGRSDSATSL APGFRFHPTD EELVRYYLKR KVTNKPFRFD AISVTDIYKS EPWDLPDKSK  60
LKSRDLEWYF FSMLDKKYGN GSKTNRATEK GYWKTTGKDR PIRQNSQVVG MKKTLVYHQG  120
RAPRGQRSNW VMHEYRLVDE ELEKAGIAQD AFVLCRIFQK SGTGPKNGEQ YGAPFIEEEW  180
DDDEVPLLPS EEMVLTEEAP VGDDAYLEMN ELGQNFDTGI TSENTALPQN FYYGEASNYV  240
EQPRDFSEDD LKPMLRGAEN RHGPSLPAEE NLDLPGQYET DAVKNEYNNA EPMNNVNAVD  300
VNYLFDESYL DALNNLPQSE GLFLEANDLS NPVEPETGGD SSGFDMLEEY LNFFDADDEN  360
MSFDPSDIFA SDTAVSNQQP PPQEDVKGGT DEVLKAIQKP LETHGNVGPS SSKQKPEAME  420
FDSDFKYPFI KQASHMLGKI PAPPALASEF PSKDAALRLR SASSSSIHVT AGVIRIENMS  480
LGGNGTEWSF GKNGNVDVIL SFGLPQQEGG PASWVPMTSL FSGKAESVVS RGWLFLMFFW  540
VLILSVSYKI GTCICAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-45916616171NO APICAL MERISTEM PROTEIN
1ut4_B1e-45916616171NO APICAL MERISTEM PROTEIN
1ut7_A1e-45916616171NO APICAL MERISTEM PROTEIN
1ut7_B1e-45916616171NO APICAL MERISTEM PROTEIN
3swm_A1e-45916619174NAC domain-containing protein 19
3swm_B1e-45916619174NAC domain-containing protein 19
3swm_C1e-45916619174NAC domain-containing protein 19
3swm_D1e-45916619174NAC domain-containing protein 19
3swp_A1e-45916619174NAC domain-containing protein 19
3swp_B1e-45916619174NAC domain-containing protein 19
3swp_C1e-45916619174NAC domain-containing protein 19
3swp_D1e-45916619174NAC domain-containing protein 19
4dul_A1e-45916616171NAC domain-containing protein 19
4dul_B1e-45916616171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root meristem (Ref.1). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G031800.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463067.10.0NAC domain-containing protein 78 isoform X1
SwissprotQ84K001e-178NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A2K1ZAW70.0A0A2K1ZAW7_POPTR; Uncharacterized protein
STRINGPOPTR_0008s03170.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-177NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]