PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.008G020300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 250aa    MW: 28233.3 Da    PI: 6.9058
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.008G020300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.12.2e-135496850
                        HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        + + ++  R+n++ KK  EL +LCd+ v++i + ++g+  +++
  Potri.008G020300.1 54 RTTKSYEDRKNTLKKKTRELAILCDVPVCLICVDPDGTTETWP 96
                        455699************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.62E-1355114IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.8675899IPR002100Transcription factor, MADS-box
PfamPF003193.4E-105895IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MQGLKQFSSL YTIHQRIILL ASLFIIINAA DLSLCFLCKA SRADHTMTPL ENKRTTKSYE  60
DRKNTLKKKT RELAILCDVP VCLICVDPDG TTETWPEEKE RVVDVLKAYK ANRTVHNVEG  120
EEKVVDKAPR VFETWDPRFD YLPEESLMDV LKILERQSQV VDQVVGKEQT GKKRKIMCDK  180
IKSKTGGDVN DERSQEAGLI TRNFLDVVGL NHQTSSYTAN YSDISSFLGK NSGSSSNDFL  240
IPVDLELRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.008G020300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311944.30.0uncharacterized protein LOC7486908
TrEMBLA0A2K1ZAA00.0A0A2K1ZAA0_POPTR; Uncharacterized protein
STRINGPOPTR_0008s02120.11e-145(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1711348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.12e-16AGAMOUS-like 103