PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G138800.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SBP | ||||||||
Protein Properties | Length: 136aa MW: 14814.8 Da PI: 9.4234 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 70.2 | 4e-22 | 76 | 123 | 1 | 48 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +Cqve+C+a+l++ak+yhrrhkvC +h+ka+vvlv+g++qrfCqqCsr Potri.007G138800.3 76 CCQVEKCTANLTDAKQYHRRHKVCGHHAKAQVVLVAGIRQRFCQQCSR 123 6**********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-22 | 70 | 123 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 18.272 | 74 | 135 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.19E-21 | 75 | 124 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.9E-17 | 77 | 124 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MDGKGKQIRM VMGREVMKKD SADDSSDDEG YEQNQMGFME DEFFESNKKK KVVVTAAAAA 60 GGGRRVSSGG GGGMRCCQVE KCTANLTDAK QYHRRHKVCG HHAKAQVVLV AGIRQRFCQQ 120 CSRSSRSAKN CDSFV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-19 | 68 | 123 | 2 | 57 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.1474 | 0.0 | bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G138800.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309744.2 | 6e-85 | squamosa promoter-binding protein 1 | ||||
Swissprot | Q38741 | 2e-21 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | B9HGP0 | 1e-83 | B9HGP0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01030.1 | 2e-84 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 4e-13 | squamosa promoter binding protein-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G138800.3 |
Publications ? help Back to Top | |||
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