PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G127700.1
Common NamePOPTR_0007s02050g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 260aa    MW: 30571.9 Da    PI: 6.3191
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G127700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.57e-2921301128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         +p GfrF+Ptdeel+ + L +k++g++++l ++i e+++y+ eP+dL+ ++ +a ++ e ++++kr+ +      ++ ++ +g Wkat + 
  Potri.007G127700.1   2 VPHGFRFNPTDEELI-QVLDRKASGQEMPL-HFILEMNVYEREPQDLEwNQSTAlSNGERFYYCKREIND-----SREVIGRGWWKATSHV 85 
                         589************.88************.89**************9643333255699****998754.....3448899********* PP

                 NAM  90 kevlsk.kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                         k+v+++ ++ lvg k+ L+f+     + +++++ kt+W+mhey+l
  Potri.007G127700.1  86 KKVYANdHQLLVGNKRPLTFHrfkdnERNRNNAIKTNWIMHEYSL 130
                         *****845556**********7776546777889*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-332145IPR003441NAC domain
PROSITE profilePS5100533.0822145IPR003441NAC domain
PfamPF023651.3E-163130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MVPHGFRFNP TDEELIQVLD RKASGQEMPL HFILEMNVYE REPQDLEWNQ STALSNGERF  60
YYCKREINDS REVIGRGWWK ATSHVKKVYA NDHQLLVGNK RPLTFHRFKD NERNRNNAIK  120
TNWIMHEYSL ESRTTEWRLC KIKYKGKPSL QEEIESIKKQ HSSRNDFEAG SSTNVGVEQH  180
EEQTLVPADS TMPLDHYNGY DQQPHDQWNN MQQLPPSPYH PNYLPALCTG SGHYYVNQQE  240
ELEPAVHEQP FPSLWSWTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-18215217171NO APICAL MERISTEM PROTEIN
1ut4_B4e-18215217171NO APICAL MERISTEM PROTEIN
1ut7_A4e-18215217171NO APICAL MERISTEM PROTEIN
1ut7_B4e-18215217171NO APICAL MERISTEM PROTEIN
3swm_A4e-18215220174NAC domain-containing protein 19
3swm_B4e-18215220174NAC domain-containing protein 19
3swm_C4e-18215220174NAC domain-containing protein 19
3swm_D4e-18215220174NAC domain-containing protein 19
3swp_A4e-18215220174NAC domain-containing protein 19
3swp_B4e-18215220174NAC domain-containing protein 19
3swp_C4e-18215220174NAC domain-containing protein 19
3swp_D4e-18215220174NAC domain-containing protein 19
4dul_A4e-18215217171NAC domain-containing protein 19
4dul_B4e-18215217171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G127700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2855424e-91GU285542.1 Populus balsamifera isolate KUU07 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855434e-91GU285543.1 Populus balsamifera isolate KUU07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855444e-91GU285544.1 Populus balsamifera isolate MGR10 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855454e-91GU285545.1 Populus balsamifera isolate MGR10 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855464e-91GU285546.1 Populus balsamifera isolate POR11 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855474e-91GU285547.1 Populus balsamifera isolate POR11 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855484e-91GU285548.1 Populus balsamifera isolate FBK13 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855494e-91GU285549.1 Populus balsamifera isolate FBK13 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855504e-91GU285550.1 Populus balsamifera isolate FRE01 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855514e-91GU285551.1 Populus balsamifera isolate FRE01 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855524e-91GU285552.1 Populus balsamifera isolate GIL14 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855534e-91GU285553.1 Populus balsamifera isolate GIL14 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855544e-91GU285554.1 Populus balsamifera isolate NWL07 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855554e-91GU285555.1 Populus balsamifera isolate NWL07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855564e-91GU285556.1 Populus balsamifera isolate STL13 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855574e-91GU285557.1 Populus balsamifera isolate STL13 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855584e-91GU285558.1 Populus balsamifera isolate WHR03 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855594e-91GU285559.1 Populus balsamifera isolate WHR03 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855604e-91GU285560.1 Populus balsamifera isolate LOV02 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2855614e-91GU285561.1 Populus balsamifera isolate LOV02 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310439.10.0NAC domain-containing protein 83
TrEMBLB9HH640.0B9HH64_POPTR; Uncharacterized protein
STRINGPOPTR_0007s02050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15526612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-21NAC domain containing protein 83