PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.007G105000.1 | ||||||||
Common Name | POPTR_0007s04250g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 197aa MW: 22235.9 Da PI: 4.3242 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99 | 6.7e-31 | 10 | 126 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGf F+Ptdeelv ++L++k++ +++ ++i+++++y ++Pw+L+ k+ ++ ++wy+Fs+ + n++t++g+Wk+ ++++ Potri.007G105000.1 10 LPPGFVFSPTDEELVLHFLHRKASLLPCNP-DIIPDLGLYPHDPWQLEGKALSSGNQWYYFSQVME--------NQVTENGFWKSLDTEEP 91 79*************************999.99***************77778899******9755........6789************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ g++vglkk Lv+ +g++t+W+m+ey+l Potri.007G105000.1 92 IFSSAGKKVGLKKYLVYCI--GAEGVETSWMMQEYHL 126 *****************95..56789*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-38 | 9 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.809 | 10 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-19 | 11 | 126 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MGDHGCSGNL PPGFVFSPTD EELVLHFLHR KASLLPCNPD IIPDLGLYPH DPWQLEGKAL 60 SSGNQWYYFS QVMENQVTEN GFWKSLDTEE PIFSSAGKKV GLKKYLVYCI GAEGVETSWM 120 MQEYHLCNSK LSGTSYKRKQ KLDCHQWILC RVYEREGSCI QNVGNTTDDD DGTELSCLDE 180 MFLSMDDDLD DISFPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-31 | 9 | 159 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-31 | 9 | 159 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-31 | 9 | 159 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-31 | 9 | 159 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-31 | 9 | 159 | 19 | 172 | NAC domain-containing protein 19 |
3swm_B | 1e-31 | 9 | 159 | 19 | 172 | NAC domain-containing protein 19 |
3swm_C | 1e-31 | 9 | 159 | 19 | 172 | NAC domain-containing protein 19 |
3swm_D | 1e-31 | 9 | 159 | 19 | 172 | NAC domain-containing protein 19 |
3swp_A | 1e-31 | 9 | 159 | 19 | 172 | NAC domain-containing protein 19 |
3swp_B | 1e-31 | 9 | 159 | 19 | 172 | NAC domain-containing protein 19 |
3swp_C | 1e-31 | 9 | 159 | 19 | 172 | NAC domain-containing protein 19 |
3swp_D | 1e-31 | 9 | 159 | 19 | 172 | NAC domain-containing protein 19 |
4dul_A | 1e-31 | 9 | 159 | 16 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-31 | 9 | 159 | 16 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.007G105000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216598 | 1e-143 | AC216598.1 Populus trichocarpa clone POP037-D13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310519.1 | 1e-146 | NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 1e-63 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | B9HES9 | 1e-145 | B9HES9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s04250.1 | 1e-145 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 | Representative plant | OGRP4510 | 10 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 4e-61 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.007G105000.1 |
Entrez Gene | 7466746 |
Publications ? help Back to Top | |||
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